Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05205 and HMPREF1058_RS05200 are separated by 190 nucleotides HMPREF1058_RS05200 and HMPREF1058_RS21005 are separated by 97 nucleotides HMPREF1058_RS21005 and HMPREF1058_RS21010 are separated by 5 nucleotides HMPREF1058_RS21010 and HMPREF1058_RS05195 overlap by 51 nucleotides HMPREF1058_RS05195 and HMPREF1058_RS05190 are separated by 207 nucleotides
HMPREF1058_RS05205: HMPREF1058_RS05205 - GNAT family N-acetyltransferase, at 216,257 to 217,198
_RS05205
HMPREF1058_RS05200: HMPREF1058_RS05200 - MaoC family dehydratase, at 217,389 to 217,853
_RS05200
HMPREF1058_RS21005: HMPREF1058_RS21005 - nitrous oxide-stimulated promoter family protein, at 217,951 to 218,244
_RS21005
HMPREF1058_RS21010: HMPREF1058_RS21010 - MGMT family protein, at 218,250 to 218,603
_RS21010
HMPREF1058_RS05195: HMPREF1058_RS05195 - hypothetical protein, at 218,553 to 219,026
_RS05195
HMPREF1058_RS05190: HMPREF1058_RS05190 - hypothetical protein, at 219,234 to 219,440
_RS05190
Position (kb) 217
218
219 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 216.979 kb on + strand, within HMPREF1058_RS05205 at 216.980 kb on - strand, within HMPREF1058_RS05205 at 216.980 kb on - strand, within HMPREF1058_RS05205 at 216.980 kb on - strand, within HMPREF1058_RS05205 at 217.026 kb on + strand, within HMPREF1058_RS05205 at 217.191 kb on + strand at 217.230 kb on - strand at 217.230 kb on - strand at 217.235 kb on - strand at 217.280 kb on + strand at 217.281 kb on - strand at 217.282 kb on + strand at 217.332 kb on + strand at 217.358 kb on + strand at 217.579 kb on + strand, within HMPREF1058_RS05200 at 217.580 kb on - strand, within HMPREF1058_RS05200 at 217.629 kb on - strand, within HMPREF1058_RS05200 at 217.629 kb on - strand, within HMPREF1058_RS05200 at 217.662 kb on + strand, within HMPREF1058_RS05200 at 217.663 kb on - strand, within HMPREF1058_RS05200 at 217.663 kb on - strand, within HMPREF1058_RS05200 at 217.663 kb on - strand, within HMPREF1058_RS05200 at 217.670 kb on + strand, within HMPREF1058_RS05200 at 217.670 kb on + strand, within HMPREF1058_RS05200 at 217.671 kb on - strand, within HMPREF1058_RS05200 at 217.674 kb on - strand, within HMPREF1058_RS05200 at 217.710 kb on + strand, within HMPREF1058_RS05200 at 217.780 kb on + strand, within HMPREF1058_RS05200 at 217.835 kb on + strand at 217.848 kb on - strand at 217.874 kb on + strand at 217.877 kb on - strand at 217.881 kb on + strand at 217.882 kb on - strand at 218.063 kb on - strand, within HMPREF1058_RS21005 at 218.063 kb on - strand, within HMPREF1058_RS21005 at 218.088 kb on + strand, within HMPREF1058_RS21005 at 218.129 kb on + strand at 218.137 kb on + strand, within HMPREF1058_RS21005 at 218.138 kb on - strand, within HMPREF1058_RS21005 at 218.140 kb on - strand, within HMPREF1058_RS21005 at 218.171 kb on + strand, within HMPREF1058_RS21005 at 218.278 kb on + strand at 218.288 kb on + strand, within HMPREF1058_RS21010 at 218.342 kb on + strand, within HMPREF1058_RS21010 at 218.345 kb on - strand, within HMPREF1058_RS21010 at 218.349 kb on - strand, within HMPREF1058_RS21010 at 218.429 kb on - strand, within HMPREF1058_RS21010 at 218.429 kb on - strand, within HMPREF1058_RS21010 at 218.536 kb on + strand, within HMPREF1058_RS21010 at 218.570 kb on - strand at 218.570 kb on - strand at 218.573 kb on + strand at 218.574 kb on - strand at 218.574 kb on - strand at 218.574 kb on - strand at 218.638 kb on - strand, within HMPREF1058_RS05195 at 218.647 kb on + strand, within HMPREF1058_RS05195 at 218.672 kb on + strand, within HMPREF1058_RS05195 at 218.672 kb on + strand, within HMPREF1058_RS05195 at 218.673 kb on - strand, within HMPREF1058_RS05195 at 218.702 kb on - strand, within HMPREF1058_RS05195 at 218.705 kb on + strand, within HMPREF1058_RS05195 at 218.706 kb on - strand, within HMPREF1058_RS05195 at 218.757 kb on - strand, within HMPREF1058_RS05195 at 218.759 kb on + strand, within HMPREF1058_RS05195 at 218.799 kb on - strand, within HMPREF1058_RS05195 at 218.799 kb on - strand, within HMPREF1058_RS05195 at 218.807 kb on - strand, within HMPREF1058_RS05195 at 218.827 kb on + strand, within HMPREF1058_RS05195 at 218.828 kb on - strand, within HMPREF1058_RS05195 at 218.829 kb on + strand, within HMPREF1058_RS05195 at 218.829 kb on + strand, within HMPREF1058_RS05195 at 218.829 kb on + strand, within HMPREF1058_RS05195 at 218.829 kb on + strand, within HMPREF1058_RS05195 at 218.829 kb on + strand, within HMPREF1058_RS05195 at 218.830 kb on - strand, within HMPREF1058_RS05195 at 218.830 kb on - strand, within HMPREF1058_RS05195 at 218.934 kb on - strand, within HMPREF1058_RS05195 at 218.967 kb on + strand, within HMPREF1058_RS05195 at 218.995 kb on - strand at 218.995 kb on - strand at 218.995 kb on - strand at 219.002 kb on + strand at 219.036 kb on + strand at 219.056 kb on - strand at 219.102 kb on + strand at 219.232 kb on - strand at 219.235 kb on + strand at 219.236 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 216,979 + HMPREF1058_RS05205 0.77 +1.5 216,980 - HMPREF1058_RS05205 0.77 -0.3 216,980 - HMPREF1058_RS05205 0.77 -2.2 216,980 - HMPREF1058_RS05205 0.77 -0.6 217,026 + HMPREF1058_RS05205 0.82 +0.8 217,191 + +1.7 217,230 - -0.4 217,230 - -0.0 217,235 - -0.6 217,280 + +2.2 217,281 - -2.0 217,282 + -1.8 217,332 + +1.8 217,358 + +0.9 217,579 + HMPREF1058_RS05200 0.41 -0.4 217,580 - HMPREF1058_RS05200 0.41 +0.2 217,629 - HMPREF1058_RS05200 0.52 -1.0 217,629 - HMPREF1058_RS05200 0.52 -0.7 217,662 + HMPREF1058_RS05200 0.59 +1.3 217,663 - HMPREF1058_RS05200 0.59 -0.6 217,663 - HMPREF1058_RS05200 0.59 -1.4 217,663 - HMPREF1058_RS05200 0.59 +0.9 217,670 + HMPREF1058_RS05200 0.60 +2.7 217,670 + HMPREF1058_RS05200 0.60 +0.4 217,671 - HMPREF1058_RS05200 0.61 -0.1 217,674 - HMPREF1058_RS05200 0.61 +0.6 217,710 + HMPREF1058_RS05200 0.69 +0.3 217,780 + HMPREF1058_RS05200 0.84 +0.3 217,835 + +0.7 217,848 - +0.3 217,874 + -2.0 217,877 - +0.6 217,881 + -1.3 217,882 - -0.0 218,063 - HMPREF1058_RS21005 0.38 -0.0 218,063 - HMPREF1058_RS21005 0.38 -0.1 218,088 + HMPREF1058_RS21005 0.47 -3.2 218,129 + -0.1 218,137 + HMPREF1058_RS21005 0.63 -1.1 218,138 - HMPREF1058_RS21005 0.64 -3.2 218,140 - HMPREF1058_RS21005 0.64 -1.5 218,171 + HMPREF1058_RS21005 0.75 -1.3 218,278 + -0.3 218,288 + HMPREF1058_RS21010 0.11 -0.8 218,342 + HMPREF1058_RS21010 0.26 +1.9 218,345 - HMPREF1058_RS21010 0.27 +0.4 218,349 - HMPREF1058_RS21010 0.28 +1.4 218,429 - HMPREF1058_RS21010 0.51 -1.2 218,429 - HMPREF1058_RS21010 0.51 +1.4 218,536 + HMPREF1058_RS21010 0.81 +0.2 218,570 - +1.2 218,570 - -1.1 218,573 + +0.8 218,574 - +0.3 218,574 - -1.2 218,574 - +0.6 218,638 - HMPREF1058_RS05195 0.18 -0.7 218,647 + HMPREF1058_RS05195 0.20 +1.6 218,672 + HMPREF1058_RS05195 0.25 -0.2 218,672 + HMPREF1058_RS05195 0.25 +1.3 218,673 - HMPREF1058_RS05195 0.25 -0.5 218,702 - HMPREF1058_RS05195 0.31 +0.2 218,705 + HMPREF1058_RS05195 0.32 -0.9 218,706 - HMPREF1058_RS05195 0.32 -2.3 218,757 - HMPREF1058_RS05195 0.43 +1.1 218,759 + HMPREF1058_RS05195 0.43 -3.1 218,799 - HMPREF1058_RS05195 0.52 -1.7 218,799 - HMPREF1058_RS05195 0.52 +1.1 218,807 - HMPREF1058_RS05195 0.54 -2.1 218,827 + HMPREF1058_RS05195 0.58 +0.3 218,828 - HMPREF1058_RS05195 0.58 -0.1 218,829 + HMPREF1058_RS05195 0.58 +1.3 218,829 + HMPREF1058_RS05195 0.58 -0.1 218,829 + HMPREF1058_RS05195 0.58 -0.4 218,829 + HMPREF1058_RS05195 0.58 -1.5 218,829 + HMPREF1058_RS05195 0.58 +1.0 218,830 - HMPREF1058_RS05195 0.58 +1.2 218,830 - HMPREF1058_RS05195 0.58 +1.0 218,934 - HMPREF1058_RS05195 0.80 -1.6 218,967 + HMPREF1058_RS05195 0.87 -0.3 218,995 - -0.1 218,995 - +0.9 218,995 - -0.8 219,002 + +4.5 219,036 + -0.6 219,056 - -1.4 219,102 + +0.3 219,232 - -0.2 219,235 + +2.2 219,236 - -0.4
Or see this region's nucleotide sequence