Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS20495

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
1,060,260	+		HMPREF1058_RS14960	0.55	-2.0
1,060,347	+		HMPREF1058_RS14960	0.68	-1.0
1,060,375	-		HMPREF1058_RS14960	0.72	+0.1
1,060,383	+		HMPREF1058_RS14960	0.74	-1.1
1,060,383	+		HMPREF1058_RS14960	0.74	-0.1
1,060,394	+		HMPREF1058_RS14960	0.75	+0.2
1,060,398	+		HMPREF1058_RS14960	0.76	-0.5
1,060,472	+		HMPREF1058_RS14960	0.87	-0.2
1,060,473	-		HMPREF1058_RS14960	0.87	+0.1
1,060,473	-		HMPREF1058_RS14960	0.87	+1.7
1,060,474	+		HMPREF1058_RS14960	0.87	+1.7
1,060,475	-		HMPREF1058_RS14960	0.87	-0.9
1,060,561	-				+0.3
1,060,586	-				-2.7
1,060,594	+				+2.0
1,060,618	+		HMPREF1058_RS14955	0.13	-0.3
1,060,619	-		HMPREF1058_RS14955	0.13	-0.3
1,060,671	+		HMPREF1058_RS14955	0.24	+0.0
1,060,691	+		HMPREF1058_RS14955	0.28	-0.9
1,060,718	-		HMPREF1058_RS14955	0.34	+1.5
1,060,738	+		HMPREF1058_RS14955	0.38	-2.2
1,060,739	-		HMPREF1058_RS14955	0.38	+0.7
1,060,759	+		HMPREF1058_RS14955	0.43	+1.2
1,060,760	-		HMPREF1058_RS14955	0.43	+0.3
1,060,805	+		HMPREF1058_RS14955	0.53	-0.7
1,060,806	-		HMPREF1058_RS14955	0.53	-1.7
1,060,976	+		HMPREF1058_RS14955	0.89	-0.6
1,060,977	-		HMPREF1058_RS14955	0.89	-1.9
1,061,027	-				+0.5
1,061,051	-				+0.1
1,061,105	+				+0.1
1,061,172	+				+1.5
1,061,222	+				-2.5
1,061,222	+				+1.4
1,061,232	+				-0.2
1,061,233	-				-0.0
1,061,349	-		HMPREF1058_RS20495	0.38	-0.7
1,061,371	+		HMPREF1058_RS20495	0.47	+0.1
1,061,371	+		HMPREF1058_RS20495	0.47	+0.3
1,061,372	-		HMPREF1058_RS20495	0.48	-1.9
1,061,378	-		HMPREF1058_RS20495	0.50	-1.4
1,061,406	-		HMPREF1058_RS20495	0.62	+0.9
1,061,455	+		HMPREF1058_RS20495	0.83	-1.0
1,061,455	+		HMPREF1058_RS20495	0.83	-2.2
1,061,456	-		HMPREF1058_RS20495	0.84	-2.0
1,061,459	+		HMPREF1058_RS20495	0.85	+0.3
1,061,460	-		HMPREF1058_RS20495	0.85	-0.2
1,061,462	-		HMPREF1058_RS20495	0.86	-1.1
1,061,502	-				-0.5
1,061,516	-				-1.9
1,061,591	-				+2.7
1,061,633	+				+1.2
1,061,634	-				+0.2
1,061,638	+				-2.2
1,061,665	-				-1.2
1,061,687	+				+1.0
1,061,759	+				-1.3
1,061,784	-				-2.0
1,061,859	-				+1.6
1,061,920	-				-0.1
1,061,922	-				+0.3
1,061,925	+				-0.1
1,061,984	+		HMPREF1058_RS14950	0.16	+0.3
1,062,017	+		HMPREF1058_RS14950	0.20	-1.9
1,062,017	+		HMPREF1058_RS14950	0.20	-0.9
1,062,104	+		HMPREF1058_RS14950	0.29	+2.7
1,062,105	-		HMPREF1058_RS14950	0.29	-1.0
1,062,126	+		HMPREF1058_RS14950	0.32	+0.6
1,062,142	+		HMPREF1058_RS14950	0.33	+0.1
1,062,146	+		HMPREF1058_RS14950	0.34	-2.4
1,062,147	-		HMPREF1058_RS14950	0.34	-0.1
1,062,151	-		HMPREF1058_RS14950	0.34	-0.3
1,062,166	+		HMPREF1058_RS14950	0.36	-2.2
1,062,167	-		HMPREF1058_RS14950	0.36	-2.4
1,062,177	+		HMPREF1058_RS14950	0.37	+0.8
1,062,179	+		HMPREF1058_RS14950	0.37	-0.1
1,062,179	+				-0.7
1,062,243	-		HMPREF1058_RS14950	0.44	-2.4
1,062,290	+		HMPREF1058_RS14950	0.50	+0.1
1,062,323	+		HMPREF1058_RS14950	0.53	+0.5
1,062,339	+		HMPREF1058_RS14950	0.55	-0.2