Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18960 and HMPREF1058_RS18955 are separated by 2 nucleotides HMPREF1058_RS18955 and HMPREF1058_RS20355 are separated by 200 nucleotides HMPREF1058_RS20355 and HMPREF1058_RS18945 overlap by 4 nucleotides
HMPREF1058_RS18960: HMPREF1058_RS18960 - hypothetical protein, at 40,841 to 41,044
_RS18960
HMPREF1058_RS18955: HMPREF1058_RS18955 - DUF551 domain-containing protein, at 41,047 to 41,409
_RS18955
HMPREF1058_RS20355: HMPREF1058_RS20355 - hypothetical protein, at 41,610 to 41,927
_RS20355
HMPREF1058_RS18945: HMPREF1058_RS18945 - DNA methylase N-4, at 41,924 to 44,440
_RS18945
Position (kb) 41
42 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 40.650 kb on + strand at 40.651 kb on - strand at 40.784 kb on - strand at 40.801 kb on + strand at 40.802 kb on - strand at 40.810 kb on - strand at 40.814 kb on + strand at 40.833 kb on + strand at 40.871 kb on + strand, within HMPREF1058_RS18960 at 40.886 kb on - strand, within HMPREF1058_RS18960 at 40.912 kb on + strand, within HMPREF1058_RS18960 at 40.936 kb on - strand, within HMPREF1058_RS18960 at 40.940 kb on - strand, within HMPREF1058_RS18960 at 40.954 kb on + strand, within HMPREF1058_RS18960 at 40.997 kb on - strand, within HMPREF1058_RS18960 at 41.026 kb on + strand at 41.026 kb on + strand at 41.031 kb on - strand at 41.031 kb on - strand at 41.033 kb on + strand at 41.035 kb on + strand at 41.035 kb on + strand at 41.036 kb on - strand at 41.096 kb on - strand, within HMPREF1058_RS18955 at 41.099 kb on - strand, within HMPREF1058_RS18955 at 41.141 kb on + strand, within HMPREF1058_RS18955 at 41.207 kb on - strand, within HMPREF1058_RS18955 at 41.207 kb on - strand, within HMPREF1058_RS18955 at 41.207 kb on - strand, within HMPREF1058_RS18955 at 41.208 kb on + strand, within HMPREF1058_RS18955 at 41.209 kb on - strand, within HMPREF1058_RS18955 at 41.209 kb on - strand, within HMPREF1058_RS18955 at 41.210 kb on + strand, within HMPREF1058_RS18955 at 41.210 kb on + strand, within HMPREF1058_RS18955 at 41.210 kb on + strand, within HMPREF1058_RS18955 at 41.210 kb on + strand, within HMPREF1058_RS18955 at 41.213 kb on - strand, within HMPREF1058_RS18955 at 41.334 kb on - strand, within HMPREF1058_RS18955 at 41.437 kb on - strand at 41.478 kb on + strand at 41.528 kb on + strand at 41.529 kb on - strand at 41.615 kb on + strand at 41.648 kb on + strand, within HMPREF1058_RS20355 at 41.649 kb on - strand, within HMPREF1058_RS20355 at 41.649 kb on - strand at 41.810 kb on + strand, within HMPREF1058_RS20355 at 41.811 kb on - strand, within HMPREF1058_RS20355 at 41.811 kb on - strand, within HMPREF1058_RS20355 at 41.842 kb on + strand, within HMPREF1058_RS20355 at 41.917 kb on + strand at 41.985 kb on + strand at 41.992 kb on - strand at 42.018 kb on + strand at 42.032 kb on - strand at 42.071 kb on + strand at 42.071 kb on + strand at 42.321 kb on - strand, within HMPREF1058_RS18945 at 42.337 kb on + strand, within HMPREF1058_RS18945 at 42.337 kb on + strand, within HMPREF1058_RS18945 at 42.338 kb on - strand, within HMPREF1058_RS18945 at 42.339 kb on + strand, within HMPREF1058_RS18945 at 42.339 kb on + strand, within HMPREF1058_RS18945 at 42.339 kb on + strand, within HMPREF1058_RS18945 at 42.339 kb on + strand, within HMPREF1058_RS18945 at 42.340 kb on - strand, within HMPREF1058_RS18945 at 42.340 kb on - strand, within HMPREF1058_RS18945 at 42.341 kb on + strand, within HMPREF1058_RS18945 at 42.341 kb on + strand, within HMPREF1058_RS18945 at 42.342 kb on - strand, within HMPREF1058_RS18945 at 42.342 kb on - strand, within HMPREF1058_RS18945 at 42.342 kb on - strand, within HMPREF1058_RS18945 at 42.343 kb on + strand, within HMPREF1058_RS18945 at 42.343 kb on + strand, within HMPREF1058_RS18945 at 42.382 kb on + strand, within HMPREF1058_RS18945 at 42.382 kb on + strand, within HMPREF1058_RS18945 at 42.382 kb on + strand, within HMPREF1058_RS18945 at 42.382 kb on + strand, within HMPREF1058_RS18945 at 42.383 kb on - strand, within HMPREF1058_RS18945 at 42.383 kb on - strand, within HMPREF1058_RS18945 at 42.387 kb on - strand, within HMPREF1058_RS18945 at 42.428 kb on - strand, within HMPREF1058_RS18945 at 42.610 kb on + strand, within HMPREF1058_RS18945 at 42.610 kb on + strand, within HMPREF1058_RS18945 at 42.610 kb on + strand, within HMPREF1058_RS18945 at 42.610 kb on + strand, within HMPREF1058_RS18945 at 42.664 kb on + strand, within HMPREF1058_RS18945 at 42.812 kb on + strand, within HMPREF1058_RS18945 at 42.817 kb on + strand, within HMPREF1058_RS18945 at 42.818 kb on - strand, within HMPREF1058_RS18945 at 42.823 kb on + strand, within HMPREF1058_RS18945 at 42.841 kb on - strand, within HMPREF1058_RS18945 at 42.877 kb on + strand, within HMPREF1058_RS18945 at 42.894 kb on + strand, within HMPREF1058_RS18945 at 42.895 kb on - strand, within HMPREF1058_RS18945 at 42.899 kb on - strand, within HMPREF1058_RS18945 at 42.904 kb on + strand, within HMPREF1058_RS18945 at 42.904 kb on + strand, within HMPREF1058_RS18945 at 42.912 kb on + strand, within HMPREF1058_RS18945
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 40,650 + -0.3 40,651 - -1.2 40,784 - -4.1 40,801 + +0.6 40,802 - +0.6 40,810 - +0.2 40,814 + +0.6 40,833 + +1.1 40,871 + HMPREF1058_RS18960 0.15 -0.7 40,886 - HMPREF1058_RS18960 0.22 -1.8 40,912 + HMPREF1058_RS18960 0.35 +1.3 40,936 - HMPREF1058_RS18960 0.47 -0.2 40,940 - HMPREF1058_RS18960 0.49 -0.3 40,954 + HMPREF1058_RS18960 0.55 +0.1 40,997 - HMPREF1058_RS18960 0.76 -1.5 41,026 + +0.6 41,026 + -0.8 41,031 - +0.7 41,031 - +1.0 41,033 + -1.7 41,035 + +1.3 41,035 + -0.3 41,036 - +0.4 41,096 - HMPREF1058_RS18955 0.13 -1.6 41,099 - HMPREF1058_RS18955 0.14 -2.0 41,141 + HMPREF1058_RS18955 0.26 -0.6 41,207 - HMPREF1058_RS18955 0.44 +0.7 41,207 - HMPREF1058_RS18955 0.44 -1.3 41,207 - HMPREF1058_RS18955 0.44 -0.1 41,208 + HMPREF1058_RS18955 0.44 +0.7 41,209 - HMPREF1058_RS18955 0.45 +0.6 41,209 - HMPREF1058_RS18955 0.45 -2.8 41,210 + HMPREF1058_RS18955 0.45 -0.2 41,210 + HMPREF1058_RS18955 0.45 +0.7 41,210 + HMPREF1058_RS18955 0.45 -0.8 41,210 + HMPREF1058_RS18955 0.45 +0.1 41,213 - HMPREF1058_RS18955 0.46 -3.9 41,334 - HMPREF1058_RS18955 0.79 +0.6 41,437 - -0.7 41,478 + -0.3 41,528 + -2.4 41,529 - +1.3 41,615 + +0.7 41,648 + HMPREF1058_RS20355 0.12 -2.4 41,649 - HMPREF1058_RS20355 0.12 -1.0 41,649 - +0.9 41,810 + HMPREF1058_RS20355 0.63 -0.3 41,811 - HMPREF1058_RS20355 0.63 -0.3 41,811 - HMPREF1058_RS20355 0.63 -0.9 41,842 + HMPREF1058_RS20355 0.73 -1.9 41,917 + -2.1 41,985 + +0.1 41,992 - +0.7 42,018 + +0.4 42,032 - +0.6 42,071 + -1.4 42,071 + -1.2 42,321 - HMPREF1058_RS18945 0.16 -0.6 42,337 + HMPREF1058_RS18945 0.16 +1.0 42,337 + HMPREF1058_RS18945 0.16 -0.1 42,338 - HMPREF1058_RS18945 0.16 +2.1 42,339 + HMPREF1058_RS18945 0.16 -2.1 42,339 + HMPREF1058_RS18945 0.16 +1.0 42,339 + HMPREF1058_RS18945 0.16 -1.1 42,339 + HMPREF1058_RS18945 0.16 -0.3 42,340 - HMPREF1058_RS18945 0.17 +0.2 42,340 - HMPREF1058_RS18945 0.17 +1.2 42,341 + HMPREF1058_RS18945 0.17 +0.8 42,341 + HMPREF1058_RS18945 0.17 -0.3 42,342 - HMPREF1058_RS18945 0.17 +2.0 42,342 - HMPREF1058_RS18945 0.17 +0.1 42,342 - HMPREF1058_RS18945 0.17 -2.4 42,343 + HMPREF1058_RS18945 0.17 +3.2 42,343 + HMPREF1058_RS18945 0.17 -1.8 42,382 + HMPREF1058_RS18945 0.18 -3.1 42,382 + HMPREF1058_RS18945 0.18 -1.9 42,382 + HMPREF1058_RS18945 0.18 +1.0 42,382 + HMPREF1058_RS18945 0.18 -1.2 42,383 - HMPREF1058_RS18945 0.18 -1.0 42,383 - HMPREF1058_RS18945 0.18 -0.1 42,387 - HMPREF1058_RS18945 0.18 -0.8 42,428 - HMPREF1058_RS18945 0.20 +0.4 42,610 + HMPREF1058_RS18945 0.27 -1.3 42,610 + HMPREF1058_RS18945 0.27 -1.3 42,610 + HMPREF1058_RS18945 0.27 -2.1 42,610 + HMPREF1058_RS18945 0.27 -3.9 42,664 + HMPREF1058_RS18945 0.29 -0.9 42,812 + HMPREF1058_RS18945 0.35 -0.9 42,817 + HMPREF1058_RS18945 0.35 -1.8 42,818 - HMPREF1058_RS18945 0.36 +0.9 42,823 + HMPREF1058_RS18945 0.36 -0.8 42,841 - HMPREF1058_RS18945 0.36 -0.9 42,877 + HMPREF1058_RS18945 0.38 -0.9 42,894 + HMPREF1058_RS18945 0.39 +1.9 42,895 - HMPREF1058_RS18945 0.39 -0.2 42,899 - HMPREF1058_RS18945 0.39 -0.1 42,904 + HMPREF1058_RS18945 0.39 -1.0 42,904 + HMPREF1058_RS18945 0.39 +0.6 42,912 + HMPREF1058_RS18945 0.39 -0.4
Or see this region's nucleotide sequence