Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS20340

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
29,599	+		HMPREF1058_RS19045	0.44	+0.9
29,668	-		HMPREF1058_RS19045	0.61	-1.1
29,668	-		HMPREF1058_RS19045	0.61	-3.7
29,705	-		HMPREF1058_RS19045	0.70	-0.8
29,742	+		HMPREF1058_RS19045	0.79	-1.4
29,742	+		HMPREF1058_RS19045	0.79	+0.9
29,747	-		HMPREF1058_RS19045	0.80	-0.3
29,815	-				-2.1
29,842	+				-1.0
29,970	+		HMPREF1058_RS20195	0.28	+0.9
30,031	-		HMPREF1058_RS20195	0.41	-1.1
30,031	-		HMPREF1058_RS20195	0.41	-2.1
30,074	+		HMPREF1058_RS20195	0.51	-2.0
30,081	-		HMPREF1058_RS20195	0.52	-1.9
30,160	-		HMPREF1058_RS20195	0.69	-1.0
30,174	-		HMPREF1058_RS20195	0.72	-0.7
30,183	+		HMPREF1058_RS20195	0.74	+1.9
30,184	-		HMPREF1058_RS20195	0.74	-0.5
30,202	-		HMPREF1058_RS20195	0.78	-0.9
30,202	-		HMPREF1058_RS20195	0.78	+1.0
30,202	-		HMPREF1058_RS20195	0.78	-1.2
30,202	-		HMPREF1058_RS20195	0.78	-1.5
30,287	-				-1.4
30,357	+				-1.5
30,405	+				-0.6
30,405	+				-1.5
30,584	-				+0.6
30,618	-		HMPREF1058_RS20340	0.17	-2.3
30,704	-		HMPREF1058_RS20340	0.53	-1.4
30,710	-		HMPREF1058_RS20340	0.56	-2.0
30,733	-		HMPREF1058_RS20340	0.66	-1.2
30,746	-		HMPREF1058_RS20340	0.71	-0.9
30,746	-		HMPREF1058_RS20340	0.71	-1.0
30,754	+		HMPREF1058_RS20340	0.75	+0.3
30,755	-		HMPREF1058_RS20340	0.75	+1.0
30,813	-				-0.1
30,820	+				-0.4
30,820	+				-0.1
30,820	+				-0.4
30,821	-				-0.6
30,827	-				+0.1
30,869	-				+3.6
30,940	+				-0.5
30,952	-				-0.4
31,007	+				-2.0
31,007	+				+0.6
31,007	+				+0.1
31,007	+				-1.6
31,008	-				+0.7
31,008	-				+0.9
31,008	-				+0.6
31,008	-				-2.2
31,008	-				-0.9
31,009	-				-2.1
31,010	-				-0.2
31,010	-				-2.4
31,010	-				-0.8
31,059	+				+1.3
31,104	-				-3.2
31,124	-				+2.1
31,211	+		HMPREF1058_RS19030	0.31	+1.1
31,240	+		HMPREF1058_RS19030	0.39	+1.5
31,241	-		HMPREF1058_RS19030	0.40	+1.0
31,278	+		HMPREF1058_RS19030	0.50	-0.3
31,279	-		HMPREF1058_RS19030	0.50	-2.6
31,282	+		HMPREF1058_RS19030	0.51	-1.4
31,282	+		HMPREF1058_RS19030	0.51	-0.7
31,293	+		HMPREF1058_RS19030	0.54	-1.4
31,294	-		HMPREF1058_RS19030	0.55	-2.5
31,340	+		HMPREF1058_RS19030	0.68	-0.7
31,341	-		HMPREF1058_RS19030	0.68	-2.3
31,341	-		HMPREF1058_RS19030	0.68	-1.9
31,355	+		HMPREF1058_RS19030	0.72	+0.4
31,390	+		HMPREF1058_RS19030	0.82	-0.7
31,391	-		HMPREF1058_RS19030	0.82	+0.5
31,393	-		HMPREF1058_RS19030	0.83	-0.4
31,394	+		HMPREF1058_RS19030	0.83	-1.3
31,394	+		HMPREF1058_RS19030	0.83	+0.5
31,394	+		HMPREF1058_RS19030	0.83	+0.1
31,395	-		HMPREF1058_RS19030	0.83	+1.1
31,434	+				+0.3
31,434	+				-0.3
31,455	+				-0.5
31,456	-				-1.2
31,462	+				-0.4
31,498	-		HMPREF1058_RS19025	0.17	+0.4
31,590	+		HMPREF1058_RS19025	0.63	-2.1
31,594	+		HMPREF1058_RS19025	0.65	+1.0
31,716	-				+2.9
31,734	-				+0.1
31,769	+				+0.0
31,795	-				+0.2