Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS19210

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
1,790	-		HMPREF1058_RS19215	0.74	-0.8
1,819	-		HMPREF1058_RS19215	0.78	-1.6
1,836	+		HMPREF1058_RS19215	0.81	+1.1
2,126	+		HMPREF1058_RS21565	0.10	+0.2
2,127	-		HMPREF1058_RS21565	0.11	-3.0
2,154	-		HMPREF1058_RS21565	0.15	-1.2
2,155	+		HMPREF1058_RS21565	0.15	-0.3
2,155	+		HMPREF1058_RS21565	0.15	-0.0
2,156	-		HMPREF1058_RS21565	0.15	+0.8
2,157	+		HMPREF1058_RS21565	0.15	-0.5
2,157	+		HMPREF1058_RS21565	0.15	+1.7
2,158	-		HMPREF1058_RS21565	0.15	-2.7
2,158	-		HMPREF1058_RS21565	0.15	+0.1
2,158	-		HMPREF1058_RS21565	0.15	-2.4
2,328	-		HMPREF1058_RS21565	0.40	+1.9
2,380	+		HMPREF1058_RS21565	0.48	-0.3
2,381	-		HMPREF1058_RS21565	0.48	+1.1
2,462	-		HMPREF1058_RS21565	0.60	+1.4
2,542	+		HMPREF1058_RS21565	0.72	-0.1
2,557	+		HMPREF1058_RS21565	0.74	-0.9
2,709	-				+0.1
2,712	-				-0.1
2,759	+				+1.1
2,760	-				+0.3
2,764	+				-1.0
2,769	+				-0.0
3,010	+		HMPREF1058_RS19210	0.67	-1.6
3,010	+		HMPREF1058_RS19210	0.67	-2.1
3,011	-		HMPREF1058_RS19210	0.67	-0.3
3,012	+		HMPREF1058_RS19210	0.68	-1.1
3,104	+				-0.6
3,104	+				-0.4
3,108	+				-0.3
3,109	-				-0.6
3,109	-				+1.0
3,164	+				+0.6
3,217	-		HMPREF1058_RS19205	0.17	-3.0
3,271	-		HMPREF1058_RS19205	0.29	-0.2
3,317	+		HMPREF1058_RS19205	0.39	-0.1
3,357	+		HMPREF1058_RS19205	0.47	-1.9
3,376	+		HMPREF1058_RS19205	0.52	+1.4
3,522	+		HMPREF1058_RS19205	0.83	+0.7
3,600	-				-0.1
3,611	+				+1.0
3,611	+				+1.0
3,695	-		HMPREF1058_RS19200	0.32	-0.6
3,735	+		HMPREF1058_RS19200	0.45	+1.1
3,889	+				-0.5
3,899	-				-0.0
3,926	-				-2.9
3,929	+				-0.1
3,929	+				-0.8
3,929	+				-1.9
3,930	-				-1.4
3,976	-				-0.2
4,002	+		HMPREF1058_RS19195	0.27	-0.1
4,003	-		HMPREF1058_RS19195	0.27	+1.3
4,003	-		HMPREF1058_RS19195	0.27	+1.9