Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS19150 and HMPREF1058_RS19145 are separated by 41 nucleotides HMPREF1058_RS19145 and HMPREF1058_RS19140 are separated by 167 nucleotides HMPREF1058_RS19140 and HMPREF1058_RS19135 are separated by 26 nucleotides
HMPREF1058_RS19150: HMPREF1058_RS19150 - phage portal protein, at 15,567 to 16,973
_RS19150
HMPREF1058_RS19145: HMPREF1058_RS19145 - phage antirepressor KilAC domain-containing protein, at 17,015 to 17,776
_RS19145
HMPREF1058_RS19140: HMPREF1058_RS19140 - hypothetical protein, at 17,944 to 18,258
_RS19140
HMPREF1058_RS19135: HMPREF1058_RS19135 - hypothetical protein, at 18,285 to 19,796
_RS19135
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 16.944 kb on - strand at 16.977 kb on + strand at 16.980 kb on - strand at 17.063 kb on + strand at 17.404 kb on + strand, within HMPREF1058_RS19145 at 17.548 kb on + strand, within HMPREF1058_RS19145 at 17.549 kb on - strand, within HMPREF1058_RS19145 at 17.625 kb on - strand, within HMPREF1058_RS19145 at 17.682 kb on - strand, within HMPREF1058_RS19145 at 17.682 kb on - strand, within HMPREF1058_RS19145 at 17.800 kb on - strand at 17.808 kb on + strand at 17.813 kb on - strand at 17.819 kb on - strand at 17.822 kb on - strand at 17.848 kb on - strand at 17.898 kb on - strand at 17.958 kb on + strand at 17.959 kb on - strand at 18.041 kb on - strand, within HMPREF1058_RS19140 at 18.050 kb on + strand, within HMPREF1058_RS19140 at 18.050 kb on + strand, within HMPREF1058_RS19140 at 18.051 kb on - strand, within HMPREF1058_RS19140 at 18.079 kb on - strand, within HMPREF1058_RS19140 at 18.099 kb on + strand, within HMPREF1058_RS19140 at 18.099 kb on + strand, within HMPREF1058_RS19140 at 18.177 kb on + strand at 18.220 kb on + strand, within HMPREF1058_RS19140 at 18.241 kb on + strand at 18.287 kb on - strand at 18.294 kb on - strand at 18.306 kb on - strand at 18.306 kb on - strand at 18.329 kb on - strand at 18.415 kb on - strand at 18.438 kb on - strand, within HMPREF1058_RS19135 at 18.476 kb on + strand, within HMPREF1058_RS19135 at 18.582 kb on + strand, within HMPREF1058_RS19135 at 18.583 kb on - strand, within HMPREF1058_RS19135 at 18.584 kb on + strand, within HMPREF1058_RS19135 at 18.626 kb on - strand, within HMPREF1058_RS19135 at 18.797 kb on - strand, within HMPREF1058_RS19135 at 18.805 kb on + strand, within HMPREF1058_RS19135 at 18.810 kb on + strand, within HMPREF1058_RS19135 at 19.130 kb on + strand, within HMPREF1058_RS19135 at 19.130 kb on + strand, within HMPREF1058_RS19135 at 19.131 kb on - strand, within HMPREF1058_RS19135 at 19.252 kb on - strand, within HMPREF1058_RS19135
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 16,944 - +0.1 16,977 + -1.0 16,980 - +0.8 17,063 + -0.1 17,404 + HMPREF1058_RS19145 0.51 -2.0 17,548 + HMPREF1058_RS19145 0.70 +1.5 17,549 - HMPREF1058_RS19145 0.70 -0.4 17,625 - HMPREF1058_RS19145 0.80 +0.1 17,682 - HMPREF1058_RS19145 0.88 -1.2 17,682 - HMPREF1058_RS19145 0.88 -1.7 17,800 - -0.9 17,808 + +0.0 17,813 - -0.3 17,819 - -1.7 17,822 - -2.0 17,848 - -0.4 17,898 - +0.3 17,958 + +0.9 17,959 - +0.7 18,041 - HMPREF1058_RS19140 0.31 -0.4 18,050 + HMPREF1058_RS19140 0.34 -0.6 18,050 + HMPREF1058_RS19140 0.34 +0.9 18,051 - HMPREF1058_RS19140 0.34 +0.1 18,079 - HMPREF1058_RS19140 0.43 -0.6 18,099 + HMPREF1058_RS19140 0.49 -1.6 18,099 + HMPREF1058_RS19140 0.49 +2.9 18,177 + +0.1 18,220 + HMPREF1058_RS19140 0.88 -1.0 18,241 + +0.1 18,287 - +0.3 18,294 - +1.4 18,306 - -2.4 18,306 - -0.3 18,329 - -1.6 18,415 - -2.0 18,438 - HMPREF1058_RS19135 0.10 +1.3 18,476 + HMPREF1058_RS19135 0.13 -1.2 18,582 + HMPREF1058_RS19135 0.20 -1.7 18,583 - HMPREF1058_RS19135 0.20 -0.2 18,584 + HMPREF1058_RS19135 0.20 +2.1 18,626 - HMPREF1058_RS19135 0.23 -3.2 18,797 - HMPREF1058_RS19135 0.34 -0.0 18,805 + HMPREF1058_RS19135 0.34 -1.3 18,810 + HMPREF1058_RS19135 0.35 +0.5 19,130 + HMPREF1058_RS19135 0.56 +1.3 19,130 + HMPREF1058_RS19135 0.56 +1.0 19,131 - HMPREF1058_RS19135 0.56 -0.3 19,252 - HMPREF1058_RS19135 0.64 -0.5
Or see this region's nucleotide sequence