Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS19095 and HMPREF1058_RS19090 are separated by 223 nucleotides HMPREF1058_RS19090 and HMPREF1058_RS19085 are separated by 211 nucleotides HMPREF1058_RS19085 and HMPREF1058_RS19080 overlap by 4 nucleotides HMPREF1058_RS19080 and HMPREF1058_RS19075 overlap by 11 nucleotides HMPREF1058_RS19075 and HMPREF1058_RS19070 are separated by 11 nucleotides
HMPREF1058_RS19100: HMPREF1058_RS19100 - hypothetical protein, at 24,405 to 25,013
_RS19100
HMPREF1058_RS19095: HMPREF1058_RS19095 - GNAT family N-acetyltransferase, at 24,998 to 25,498
_RS19095
HMPREF1058_RS19090: HMPREF1058_RS19090 - tRNA-Phe, at 25,722 to 25,794
_RS19090
HMPREF1058_RS19085: HMPREF1058_RS19085 - hypothetical protein, at 26,006 to 26,191
_RS19085
HMPREF1058_RS19080: HMPREF1058_RS19080 - hypothetical protein, at 26,188 to 26,373
_RS19080
HMPREF1058_RS19075: HMPREF1058_RS19075 - DUF3560 domain-containing protein, at 26,363 to 27,013
_RS19075
HMPREF1058_RS19070: HMPREF1058_RS19070 - hypothetical protein, at 27,025 to 27,309
_RS19070
Position (kb) 26
27 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 25.028 kb on - strand at 25.028 kb on - strand at 25.035 kb on - strand at 25.035 kb on - strand at 25.036 kb on + strand at 25.036 kb on + strand at 25.040 kb on + strand at 25.040 kb on + strand at 25.040 kb on + strand at 25.040 kb on + strand at 25.063 kb on + strand, within HMPREF1058_RS19095 at 25.076 kb on - strand, within HMPREF1058_RS19095 at 25.167 kb on + strand, within HMPREF1058_RS19095 at 25.200 kb on - strand, within HMPREF1058_RS19095 at 25.232 kb on - strand, within HMPREF1058_RS19095 at 25.277 kb on - strand, within HMPREF1058_RS19095 at 25.301 kb on + strand, within HMPREF1058_RS19095 at 25.302 kb on - strand, within HMPREF1058_RS19095 at 25.329 kb on - strand, within HMPREF1058_RS19095 at 25.360 kb on - strand, within HMPREF1058_RS19095 at 25.416 kb on + strand, within HMPREF1058_RS19095 at 25.417 kb on - strand, within HMPREF1058_RS19095 at 25.424 kb on + strand, within HMPREF1058_RS19095 at 25.424 kb on + strand, within HMPREF1058_RS19095 at 25.426 kb on + strand, within HMPREF1058_RS19095 at 25.426 kb on + strand, within HMPREF1058_RS19095 at 25.426 kb on + strand, within HMPREF1058_RS19095 at 25.485 kb on - strand at 25.510 kb on + strand at 25.514 kb on + strand at 25.514 kb on + strand at 25.537 kb on + strand at 25.708 kb on - strand at 25.711 kb on - strand at 25.714 kb on - strand at 25.773 kb on - strand, within HMPREF1058_RS19090 at 25.902 kb on - strand at 26.008 kb on - strand at 26.050 kb on + strand, within HMPREF1058_RS19085 at 26.060 kb on - strand, within HMPREF1058_RS19085 at 26.064 kb on - strand, within HMPREF1058_RS19085 at 26.084 kb on - strand, within HMPREF1058_RS19085 at 26.091 kb on + strand, within HMPREF1058_RS19085 at 26.091 kb on + strand, within HMPREF1058_RS19085 at 26.178 kb on - strand at 26.224 kb on - strand, within HMPREF1058_RS19080 at 26.249 kb on + strand, within HMPREF1058_RS19080 at 26.250 kb on - strand, within HMPREF1058_RS19080 at 26.251 kb on + strand, within HMPREF1058_RS19080 at 26.252 kb on - strand, within HMPREF1058_RS19080 at 26.316 kb on + strand, within HMPREF1058_RS19080 at 26.317 kb on - strand at 26.317 kb on - strand, within HMPREF1058_RS19080 at 26.400 kb on + strand at 26.436 kb on + strand, within HMPREF1058_RS19075 at 26.441 kb on - strand, within HMPREF1058_RS19075 at 26.441 kb on - strand, within HMPREF1058_RS19075 at 26.448 kb on + strand, within HMPREF1058_RS19075 at 26.515 kb on + strand, within HMPREF1058_RS19075 at 26.516 kb on - strand, within HMPREF1058_RS19075 at 26.711 kb on + strand, within HMPREF1058_RS19075 at 26.728 kb on + strand, within HMPREF1058_RS19075 at 26.825 kb on + strand, within HMPREF1058_RS19075 at 26.825 kb on + strand, within HMPREF1058_RS19075 at 26.857 kb on - strand, within HMPREF1058_RS19075 at 26.857 kb on - strand, within HMPREF1058_RS19075 at 26.863 kb on - strand, within HMPREF1058_RS19075 at 26.863 kb on - strand, within HMPREF1058_RS19075 at 26.890 kb on + strand, within HMPREF1058_RS19075 at 26.920 kb on - strand, within HMPREF1058_RS19075 at 26.930 kb on - strand, within HMPREF1058_RS19075 at 26.938 kb on + strand, within HMPREF1058_RS19075 at 27.007 kb on + strand at 27.008 kb on - strand at 27.008 kb on - strand at 27.013 kb on + strand at 27.019 kb on + strand at 27.046 kb on + strand at 27.098 kb on - strand, within HMPREF1058_RS19070
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 25,028 - -1.8 25,028 - +0.0 25,035 - -0.1 25,035 - -2.6 25,036 + +0.4 25,036 + -0.2 25,040 + +1.4 25,040 + +1.5 25,040 + -1.4 25,040 + -0.4 25,063 + HMPREF1058_RS19095 0.13 -1.4 25,076 - HMPREF1058_RS19095 0.16 -1.3 25,167 + HMPREF1058_RS19095 0.34 +0.1 25,200 - HMPREF1058_RS19095 0.40 -1.1 25,232 - HMPREF1058_RS19095 0.47 +0.7 25,277 - HMPREF1058_RS19095 0.56 +0.5 25,301 + HMPREF1058_RS19095 0.60 +1.9 25,302 - HMPREF1058_RS19095 0.61 -2.1 25,329 - HMPREF1058_RS19095 0.66 +0.3 25,360 - HMPREF1058_RS19095 0.72 -0.8 25,416 + HMPREF1058_RS19095 0.83 -1.4 25,417 - HMPREF1058_RS19095 0.84 -0.9 25,424 + HMPREF1058_RS19095 0.85 -3.1 25,424 + HMPREF1058_RS19095 0.85 -0.7 25,426 + HMPREF1058_RS19095 0.85 -0.7 25,426 + HMPREF1058_RS19095 0.85 +0.6 25,426 + HMPREF1058_RS19095 0.85 +0.7 25,485 - +0.9 25,510 + +0.2 25,514 + -2.5 25,514 + -1.2 25,537 + -1.8 25,708 - -1.1 25,711 - -2.4 25,714 - +1.7 25,773 - HMPREF1058_RS19090 0.70 +1.1 25,902 - -0.4 26,008 - -0.1 26,050 + HMPREF1058_RS19085 0.24 -2.3 26,060 - HMPREF1058_RS19085 0.29 +0.7 26,064 - HMPREF1058_RS19085 0.31 -0.1 26,084 - HMPREF1058_RS19085 0.42 -0.3 26,091 + HMPREF1058_RS19085 0.46 -2.8 26,091 + HMPREF1058_RS19085 0.46 -0.7 26,178 - +0.1 26,224 - HMPREF1058_RS19080 0.19 +0.7 26,249 + HMPREF1058_RS19080 0.33 -0.4 26,250 - HMPREF1058_RS19080 0.33 -0.3 26,251 + HMPREF1058_RS19080 0.34 -0.3 26,252 - HMPREF1058_RS19080 0.34 -0.5 26,316 + HMPREF1058_RS19080 0.69 -1.4 26,317 - +1.9 26,317 - HMPREF1058_RS19080 0.69 +2.0 26,400 + +1.2 26,436 + HMPREF1058_RS19075 0.11 -1.9 26,441 - HMPREF1058_RS19075 0.12 +1.9 26,441 - HMPREF1058_RS19075 0.12 -1.6 26,448 + HMPREF1058_RS19075 0.13 -1.4 26,515 + HMPREF1058_RS19075 0.23 -0.6 26,516 - HMPREF1058_RS19075 0.24 +0.9 26,711 + HMPREF1058_RS19075 0.53 -2.6 26,728 + HMPREF1058_RS19075 0.56 +0.9 26,825 + HMPREF1058_RS19075 0.71 +0.3 26,825 + HMPREF1058_RS19075 0.71 -1.2 26,857 - HMPREF1058_RS19075 0.76 +0.1 26,857 - HMPREF1058_RS19075 0.76 +0.5 26,863 - HMPREF1058_RS19075 0.77 +0.4 26,863 - HMPREF1058_RS19075 0.77 -2.2 26,890 + HMPREF1058_RS19075 0.81 -1.9 26,920 - HMPREF1058_RS19075 0.86 -0.6 26,930 - HMPREF1058_RS19075 0.87 -0.9 26,938 + HMPREF1058_RS19075 0.88 -2.3 27,007 + +0.1 27,008 - -0.6 27,008 - -1.3 27,013 + -1.7 27,019 + -2.9 27,046 + +4.5 27,098 - HMPREF1058_RS19070 0.26 +0.9
Or see this region's nucleotide sequence