Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS19025 and HMPREF1058_RS19020 are separated by 597 nucleotides HMPREF1058_RS19020 and HMPREF1058_RS19015 are separated by 39 nucleotides HMPREF1058_RS19015 and HMPREF1058_RS19010 are separated by 391 nucleotides
HMPREF1058_RS19025: HMPREF1058_RS19025 - hypothetical protein, at 31,465 to 31,662
_RS19025
HMPREF1058_RS19020: HMPREF1058_RS19020 - hypothetical protein, at 32,260 to 32,469
_RS19020
HMPREF1058_RS19015: HMPREF1058_RS19015 - hypothetical protein, at 32,509 to 32,763
_RS19015
HMPREF1058_RS19010: HMPREF1058_RS19010 - M48 family metallopeptidase, at 33,155 to 33,940
_RS19010
Position (kb) 32
33 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 31.590 kb on + strand, within HMPREF1058_RS19025 at 31.594 kb on + strand, within HMPREF1058_RS19025 at 31.716 kb on - strand at 31.734 kb on - strand at 31.769 kb on + strand at 31.795 kb on - strand at 31.825 kb on + strand at 31.827 kb on + strand at 31.856 kb on - strand at 32.217 kb on + strand at 32.225 kb on + strand at 32.225 kb on + strand at 32.225 kb on + strand at 32.225 kb on + strand at 32.262 kb on - strand at 32.262 kb on - strand at 32.282 kb on - strand, within HMPREF1058_RS19020 at 32.282 kb on - strand, within HMPREF1058_RS19020 at 32.346 kb on + strand, within HMPREF1058_RS19020 at 32.358 kb on + strand, within HMPREF1058_RS19020 at 32.360 kb on + strand, within HMPREF1058_RS19020 at 32.361 kb on - strand, within HMPREF1058_RS19020 at 32.363 kb on - strand, within HMPREF1058_RS19020 at 32.431 kb on + strand, within HMPREF1058_RS19020 at 32.469 kb on + strand at 32.511 kb on - strand at 32.516 kb on - strand at 32.516 kb on - strand at 32.516 kb on - strand at 32.539 kb on - strand, within HMPREF1058_RS19015 at 32.583 kb on + strand, within HMPREF1058_RS19015 at 32.584 kb on - strand, within HMPREF1058_RS19015 at 32.618 kb on + strand, within HMPREF1058_RS19015 at 32.629 kb on - strand, within HMPREF1058_RS19015 at 32.633 kb on - strand, within HMPREF1058_RS19015 at 32.633 kb on - strand, within HMPREF1058_RS19015 at 32.656 kb on - strand, within HMPREF1058_RS19015 at 32.746 kb on - strand at 32.746 kb on - strand at 32.746 kb on - strand at 32.747 kb on + strand at 32.747 kb on + strand at 32.747 kb on + strand at 32.748 kb on - strand at 32.748 kb on - strand at 32.748 kb on - strand at 32.750 kb on - strand at 32.850 kb on - strand at 32.858 kb on + strand at 32.866 kb on + strand at 32.873 kb on + strand at 32.931 kb on + strand at 33.070 kb on + strand at 33.070 kb on + strand at 33.071 kb on - strand at 33.141 kb on - strand at 33.148 kb on + strand at 33.198 kb on - strand at 33.198 kb on - strand at 33.296 kb on - strand, within HMPREF1058_RS19010 at 33.544 kb on - strand, within HMPREF1058_RS19010 at 33.544 kb on - strand, within HMPREF1058_RS19010 at 33.621 kb on - strand, within HMPREF1058_RS19010 at 33.686 kb on - strand, within HMPREF1058_RS19010 at 33.686 kb on - strand, within HMPREF1058_RS19010 at 33.688 kb on - strand, within HMPREF1058_RS19010 at 33.688 kb on - strand, within HMPREF1058_RS19010 at 33.688 kb on - strand, within HMPREF1058_RS19010 at 33.692 kb on + strand, within HMPREF1058_RS19010 at 33.758 kb on + strand, within HMPREF1058_RS19010 at 33.759 kb on - strand, within HMPREF1058_RS19010
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 31,590 + HMPREF1058_RS19025 0.63 -2.1 31,594 + HMPREF1058_RS19025 0.65 +1.0 31,716 - +2.9 31,734 - +0.1 31,769 + +0.0 31,795 - +0.2 31,825 + -0.4 31,827 + -0.8 31,856 - -2.6 32,217 + -1.9 32,225 + -2.7 32,225 + -2.9 32,225 + +0.6 32,225 + +0.9 32,262 - +1.3 32,262 - -1.2 32,282 - HMPREF1058_RS19020 0.10 +0.0 32,282 - HMPREF1058_RS19020 0.10 +1.9 32,346 + HMPREF1058_RS19020 0.41 -0.0 32,358 + HMPREF1058_RS19020 0.47 -0.0 32,360 + HMPREF1058_RS19020 0.48 -1.0 32,361 - HMPREF1058_RS19020 0.48 +0.3 32,363 - HMPREF1058_RS19020 0.49 -2.3 32,431 + HMPREF1058_RS19020 0.81 +1.4 32,469 + +2.5 32,511 - +0.1 32,516 - -1.7 32,516 - -1.0 32,516 - +0.3 32,539 - HMPREF1058_RS19015 0.12 -0.3 32,583 + HMPREF1058_RS19015 0.29 -2.4 32,584 - HMPREF1058_RS19015 0.29 -1.3 32,618 + HMPREF1058_RS19015 0.43 -2.3 32,629 - HMPREF1058_RS19015 0.47 +0.9 32,633 - HMPREF1058_RS19015 0.49 -0.6 32,633 - HMPREF1058_RS19015 0.49 +0.3 32,656 - HMPREF1058_RS19015 0.58 -0.8 32,746 - +0.8 32,746 - +0.9 32,746 - -2.8 32,747 + -2.3 32,747 + +0.4 32,747 + -0.7 32,748 - -1.0 32,748 - -0.4 32,748 - -0.8 32,750 - +1.0 32,850 - -1.5 32,858 + +1.9 32,866 + -0.7 32,873 + +0.3 32,931 + -0.1 33,070 + -1.7 33,070 + +0.1 33,071 - -1.4 33,141 - +0.3 33,148 + -1.0 33,198 - -2.0 33,198 - -1.7 33,296 - HMPREF1058_RS19010 0.18 -2.7 33,544 - HMPREF1058_RS19010 0.49 -0.1 33,544 - HMPREF1058_RS19010 0.49 +1.0 33,621 - HMPREF1058_RS19010 0.59 +1.1 33,686 - HMPREF1058_RS19010 0.68 -2.0 33,686 - HMPREF1058_RS19010 0.68 +2.8 33,688 - HMPREF1058_RS19010 0.68 -1.5 33,688 - HMPREF1058_RS19010 0.68 +0.5 33,688 - HMPREF1058_RS19010 0.68 -0.4 33,692 + HMPREF1058_RS19010 0.68 -1.6 33,758 + HMPREF1058_RS19010 0.77 +0.4 33,759 - HMPREF1058_RS19010 0.77 +0.7
Or see this region's nucleotide sequence