Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18945 and HMPREF1058_RS18940 are separated by 4 nucleotides HMPREF1058_RS18940 and HMPREF1058_RS18935 are separated by 187 nucleotides HMPREF1058_RS18935 and HMPREF1058_RS18930 overlap by 26 nucleotides
HMPREF1058_RS18945: HMPREF1058_RS18945 - DNA methylase N-4, at 41,924 to 44,440
_RS18945
HMPREF1058_RS18940: HMPREF1058_RS18940 - hypothetical protein, at 44,445 to 44,846
_RS18940
HMPREF1058_RS18935: HMPREF1058_RS18935 - hypothetical protein, at 45,034 to 45,615
_RS18935
HMPREF1058_RS18930: HMPREF1058_RS18930 - hypothetical protein, at 45,590 to 46,603
_RS18930
Position (kb) 44
45 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 43.697 kb on + strand, within HMPREF1058_RS18945 at 43.747 kb on + strand, within HMPREF1058_RS18945 at 43.747 kb on + strand, within HMPREF1058_RS18945 at 43.747 kb on + strand, within HMPREF1058_RS18945 at 43.748 kb on - strand, within HMPREF1058_RS18945 at 43.748 kb on - strand, within HMPREF1058_RS18945 at 43.834 kb on + strand, within HMPREF1058_RS18945 at 43.835 kb on - strand, within HMPREF1058_RS18945 at 43.875 kb on + strand, within HMPREF1058_RS18945 at 43.893 kb on + strand, within HMPREF1058_RS18945 at 43.893 kb on + strand, within HMPREF1058_RS18945 at 43.894 kb on - strand, within HMPREF1058_RS18945 at 43.991 kb on + strand, within HMPREF1058_RS18945 at 43.995 kb on - strand, within HMPREF1058_RS18945 at 44.028 kb on + strand, within HMPREF1058_RS18945 at 44.029 kb on - strand, within HMPREF1058_RS18945 at 44.029 kb on - strand, within HMPREF1058_RS18945 at 44.039 kb on + strand, within HMPREF1058_RS18945 at 44.076 kb on + strand, within HMPREF1058_RS18945 at 44.111 kb on + strand, within HMPREF1058_RS18945 at 44.122 kb on + strand, within HMPREF1058_RS18945 at 44.123 kb on - strand, within HMPREF1058_RS18945 at 44.123 kb on - strand, within HMPREF1058_RS18945 at 44.125 kb on + strand, within HMPREF1058_RS18945 at 44.125 kb on + strand, within HMPREF1058_RS18945 at 44.125 kb on + strand, within HMPREF1058_RS18945 at 44.129 kb on + strand, within HMPREF1058_RS18945 at 44.129 kb on + strand, within HMPREF1058_RS18945 at 44.129 kb on + strand, within HMPREF1058_RS18945 at 44.129 kb on + strand, within HMPREF1058_RS18945 at 44.130 kb on - strand, within HMPREF1058_RS18945 at 44.133 kb on + strand, within HMPREF1058_RS18945 at 44.133 kb on + strand, within HMPREF1058_RS18945 at 44.133 kb on + strand, within HMPREF1058_RS18945 at 44.133 kb on + strand, within HMPREF1058_RS18945 at 44.134 kb on - strand, within HMPREF1058_RS18945 at 44.184 kb on - strand, within HMPREF1058_RS18945 at 44.184 kb on - strand, within HMPREF1058_RS18945 at 44.186 kb on + strand, within HMPREF1058_RS18945 at 44.187 kb on - strand, within HMPREF1058_RS18945 at 44.205 kb on - strand at 44.246 kb on + strand at 44.324 kb on + strand at 44.324 kb on + strand at 44.348 kb on + strand at 44.348 kb on + strand at 44.349 kb on - strand at 44.360 kb on - strand at 44.428 kb on + strand at 44.430 kb on + strand at 44.430 kb on + strand at 44.441 kb on + strand at 44.534 kb on + strand, within HMPREF1058_RS18940 at 44.545 kb on + strand, within HMPREF1058_RS18940 at 44.553 kb on - strand, within HMPREF1058_RS18940 at 44.943 kb on + strand at 45.044 kb on - strand at 45.282 kb on + strand, within HMPREF1058_RS18935 at 45.319 kb on + strand, within HMPREF1058_RS18935 at 45.326 kb on + strand, within HMPREF1058_RS18935 at 45.460 kb on - strand, within HMPREF1058_RS18935 at 45.522 kb on + strand, within HMPREF1058_RS18935
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 43,697 + HMPREF1058_RS18945 0.70 -0.4 43,747 + HMPREF1058_RS18945 0.72 -1.6 43,747 + HMPREF1058_RS18945 0.72 -0.3 43,747 + HMPREF1058_RS18945 0.72 -1.0 43,748 - HMPREF1058_RS18945 0.72 +0.2 43,748 - HMPREF1058_RS18945 0.72 +0.6 43,834 + HMPREF1058_RS18945 0.76 -2.3 43,835 - HMPREF1058_RS18945 0.76 -3.1 43,875 + HMPREF1058_RS18945 0.78 -0.5 43,893 + HMPREF1058_RS18945 0.78 -0.1 43,893 + HMPREF1058_RS18945 0.78 -0.7 43,894 - HMPREF1058_RS18945 0.78 +0.8 43,991 + HMPREF1058_RS18945 0.82 -1.8 43,995 - HMPREF1058_RS18945 0.82 +1.3 44,028 + HMPREF1058_RS18945 0.84 -2.1 44,029 - HMPREF1058_RS18945 0.84 +0.6 44,029 - HMPREF1058_RS18945 0.84 -1.0 44,039 + HMPREF1058_RS18945 0.84 +1.0 44,076 + HMPREF1058_RS18945 0.85 -0.1 44,111 + HMPREF1058_RS18945 0.87 +2.9 44,122 + HMPREF1058_RS18945 0.87 -0.3 44,123 - HMPREF1058_RS18945 0.87 +0.6 44,123 - HMPREF1058_RS18945 0.87 +1.4 44,125 + HMPREF1058_RS18945 0.87 +0.3 44,125 + HMPREF1058_RS18945 0.87 -1.3 44,125 + HMPREF1058_RS18945 0.87 -0.1 44,129 + HMPREF1058_RS18945 0.88 -0.8 44,129 + HMPREF1058_RS18945 0.88 +0.7 44,129 + HMPREF1058_RS18945 0.88 -0.1 44,129 + HMPREF1058_RS18945 0.88 -0.9 44,130 - HMPREF1058_RS18945 0.88 -0.1 44,133 + HMPREF1058_RS18945 0.88 +1.5 44,133 + HMPREF1058_RS18945 0.88 -0.8 44,133 + HMPREF1058_RS18945 0.88 +0.3 44,133 + HMPREF1058_RS18945 0.88 -0.6 44,134 - HMPREF1058_RS18945 0.88 +1.7 44,184 - HMPREF1058_RS18945 0.90 -3.5 44,184 - HMPREF1058_RS18945 0.90 -0.7 44,186 + HMPREF1058_RS18945 0.90 -0.8 44,187 - HMPREF1058_RS18945 0.90 -2.3 44,205 - -1.6 44,246 + -0.6 44,324 + -1.1 44,324 + +0.7 44,348 + -1.9 44,348 + +1.7 44,349 - +0.1 44,360 - +1.7 44,428 + -2.4 44,430 + -2.4 44,430 + -0.3 44,441 + -2.6 44,534 + HMPREF1058_RS18940 0.22 -1.2 44,545 + HMPREF1058_RS18940 0.25 -1.4 44,553 - HMPREF1058_RS18940 0.27 +0.6 44,943 + -0.9 45,044 - +1.3 45,282 + HMPREF1058_RS18935 0.43 +0.1 45,319 + HMPREF1058_RS18935 0.49 -0.3 45,326 + HMPREF1058_RS18935 0.50 -1.0 45,460 - HMPREF1058_RS18935 0.73 +1.3 45,522 + HMPREF1058_RS18935 0.84 -0.2
Or see this region's nucleotide sequence