Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18775 and HMPREF1058_RS18770 are separated by 32 nucleotides HMPREF1058_RS18770 and HMPREF1058_RS20375 are separated by 123 nucleotides HMPREF1058_RS20375 and HMPREF1058_RS18765 are separated by 31 nucleotides
HMPREF1058_RS18775: HMPREF1058_RS18775 - S9 family peptidase, at 74,580 to 77,294
_RS18775
HMPREF1058_RS18770: HMPREF1058_RS18770 - hypothetical protein, at 77,327 to 77,563
_RS18770
HMPREF1058_RS20375: HMPREF1058_RS20375 - hypothetical protein, at 77,687 to 77,914
_RS20375
HMPREF1058_RS18765: HMPREF1058_RS18765 - formate--tetrahydrofolate ligase, at 77,946 to 79,613
_RS18765
Position (kb) 77
78 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 76.377 kb on - strand, within HMPREF1058_RS18775 at 76.377 kb on - strand, within HMPREF1058_RS18775 at 76.644 kb on + strand, within HMPREF1058_RS18775 at 76.723 kb on + strand, within HMPREF1058_RS18775 at 77.024 kb on - strand at 77.096 kb on - strand at 77.263 kb on - strand at 77.263 kb on - strand at 77.283 kb on + strand at 77.284 kb on - strand at 77.339 kb on - strand at 77.382 kb on - strand, within HMPREF1058_RS18770 at 77.506 kb on + strand, within HMPREF1058_RS18770 at 77.525 kb on - strand, within HMPREF1058_RS18770 at 77.594 kb on - strand at 77.633 kb on + strand at 77.650 kb on - strand at 77.650 kb on - strand at 77.651 kb on + strand at 77.660 kb on + strand at 77.660 kb on + strand at 77.660 kb on + strand at 77.660 kb on + strand at 77.661 kb on - strand at 77.680 kb on - strand at 77.729 kb on - strand, within HMPREF1058_RS20375 at 77.730 kb on + strand, within HMPREF1058_RS20375 at 77.730 kb on + strand, within HMPREF1058_RS20375 at 77.730 kb on + strand, within HMPREF1058_RS20375 at 77.802 kb on + strand, within HMPREF1058_RS20375 at 77.802 kb on + strand, within HMPREF1058_RS20375 at 77.803 kb on - strand, within HMPREF1058_RS20375 at 77.807 kb on + strand, within HMPREF1058_RS20375 at 77.822 kb on - strand, within HMPREF1058_RS20375 at 77.837 kb on - strand, within HMPREF1058_RS20375 at 77.962 kb on - strand at 77.985 kb on - strand at 78.189 kb on + strand, within HMPREF1058_RS18765 at 78.194 kb on + strand, within HMPREF1058_RS18765 at 78.226 kb on + strand, within HMPREF1058_RS18765 at 78.226 kb on + strand, within HMPREF1058_RS18765 at 78.227 kb on - strand, within HMPREF1058_RS18765 at 78.227 kb on - strand, within HMPREF1058_RS18765 at 78.230 kb on + strand, within HMPREF1058_RS18765 at 78.231 kb on - strand, within HMPREF1058_RS18765 at 78.248 kb on - strand, within HMPREF1058_RS18765 at 78.255 kb on - strand, within HMPREF1058_RS18765 at 78.276 kb on - strand, within HMPREF1058_RS18765 at 78.307 kb on + strand, within HMPREF1058_RS18765 at 78.445 kb on + strand, within HMPREF1058_RS18765 at 78.445 kb on + strand, within HMPREF1058_RS18765 at 78.446 kb on - strand, within HMPREF1058_RS18765
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 76,377 - HMPREF1058_RS18775 0.66 -0.2 76,377 - HMPREF1058_RS18775 0.66 -2.1 76,644 + HMPREF1058_RS18775 0.76 +0.6 76,723 + HMPREF1058_RS18775 0.79 -2.2 77,024 - -0.9 77,096 - -2.1 77,263 - -2.2 77,263 - +2.9 77,283 + -0.4 77,284 - +0.1 77,339 - -0.1 77,382 - HMPREF1058_RS18770 0.23 -0.4 77,506 + HMPREF1058_RS18770 0.76 -2.6 77,525 - HMPREF1058_RS18770 0.84 +1.9 77,594 - -1.2 77,633 + +0.7 77,650 - +0.3 77,650 - +1.5 77,651 + -0.8 77,660 + +1.0 77,660 + -0.9 77,660 + -2.6 77,660 + -0.4 77,661 - +1.6 77,680 - -1.6 77,729 - HMPREF1058_RS20375 0.18 -0.1 77,730 + HMPREF1058_RS20375 0.19 -1.2 77,730 + HMPREF1058_RS20375 0.19 -0.3 77,730 + HMPREF1058_RS20375 0.19 +2.9 77,802 + HMPREF1058_RS20375 0.50 +1.0 77,802 + HMPREF1058_RS20375 0.50 -1.3 77,803 - HMPREF1058_RS20375 0.51 -0.1 77,807 + HMPREF1058_RS20375 0.53 -2.4 77,822 - HMPREF1058_RS20375 0.59 +0.9 77,837 - HMPREF1058_RS20375 0.66 -1.3 77,962 - -2.1 77,985 - -1.1 78,189 + HMPREF1058_RS18765 0.15 -0.1 78,194 + HMPREF1058_RS18765 0.15 -0.8 78,226 + HMPREF1058_RS18765 0.17 +1.7 78,226 + HMPREF1058_RS18765 0.17 -1.5 78,227 - HMPREF1058_RS18765 0.17 +1.9 78,227 - HMPREF1058_RS18765 0.17 -0.0 78,230 + HMPREF1058_RS18765 0.17 -1.5 78,231 - HMPREF1058_RS18765 0.17 +0.7 78,248 - HMPREF1058_RS18765 0.18 -1.0 78,255 - HMPREF1058_RS18765 0.19 -0.8 78,276 - HMPREF1058_RS18765 0.20 +1.1 78,307 + HMPREF1058_RS18765 0.22 -0.8 78,445 + HMPREF1058_RS18765 0.30 -1.3 78,445 + HMPREF1058_RS18765 0.30 -1.0 78,446 - HMPREF1058_RS18765 0.30 +0.8
Or see this region's nucleotide sequence