Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS18755

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
80,249	-		HMPREF1058_RS18760	0.47	+1.1
80,249	-		HMPREF1058_RS18760	0.47	+0.6
80,320	-		HMPREF1058_RS18760	0.53	-2.3
80,469	+		HMPREF1058_RS18760	0.65	-0.1
80,481	-		HMPREF1058_RS18760	0.66	-1.7
80,534	+		HMPREF1058_RS18760	0.71	+0.4
80,717	-		HMPREF1058_RS18760	0.86	-1.1
80,717	-		HMPREF1058_RS18760	0.86	-0.9
80,717	-		HMPREF1058_RS18760	0.86	-2.3
80,754	-		HMPREF1058_RS18760	0.89	-2.5
80,810	+				+0.4
80,811	-				-1.5
80,817	+				+1.1
80,821	+				-3.0
80,822	-				+0.3
80,899	-				-0.3
80,904	-				-0.4
80,929	-				-1.4
80,964	+				-0.2
80,990	+				-1.7
81,024	-				-0.9
81,075	+				-1.6
81,107	+				+0.1
81,153	+				-0.4
81,193	+				-0.1
81,195	+				+1.3
81,196	-				+0.2
81,198	-				-1.5
81,198	-				-0.1
81,240	+				-0.1
81,278	+				+0.5
81,279	-				-0.8
81,306	-				-0.7
81,470	+		HMPREF1058_RS18755	0.23	-0.3
81,475	+		HMPREF1058_RS18755	0.23	+1.6
81,496	+		HMPREF1058_RS18755	0.25	-1.2
81,500	-		HMPREF1058_RS18755	0.25	-0.9
81,500	-		HMPREF1058_RS18755	0.25	-2.0
81,539	+		HMPREF1058_RS18755	0.29	-0.1
81,540	-		HMPREF1058_RS18755	0.29	+0.7
81,555	+		HMPREF1058_RS18755	0.30	-2.9
81,619	-		HMPREF1058_RS18755	0.35	-0.7
81,714	+		HMPREF1058_RS18755	0.43	-0.1
82,033	+		HMPREF1058_RS18755	0.69	+0.1
82,033	+		HMPREF1058_RS18755	0.69	-1.8
82,091	-		HMPREF1058_RS18755	0.74	-1.4
82,160	-		HMPREF1058_RS18755	0.79	-0.6
82,400	+				-2.6
82,400	+				-0.3
82,468	-				+2.6
82,527	+		HMPREF1058_RS18750	0.19	-1.3
82,528	-		HMPREF1058_RS18750	0.19	+0.4
82,567	-		HMPREF1058_RS18750	0.25	-0.5
82,669	-		HMPREF1058_RS18750	0.43	-0.4
82,704	+		HMPREF1058_RS18750	0.49	+0.5
82,855	+		HMPREF1058_RS18750	0.75	+1.2
82,856	-		HMPREF1058_RS18750	0.75	+0.3
82,911	+		HMPREF1058_RS18750	0.85	-0.7
82,911	+		HMPREF1058_RS18750	0.85	-1.5
82,914	-		HMPREF1058_RS18750	0.85	+0.7
82,935	+		HMPREF1058_RS18750	0.89	-0.6
82,959	-				-1.9
83,004	+				-0.5
83,010	+				+0.1
83,044	-				+0.6
83,047	+				-1.6
83,276	+				-0.2
83,381	-		HMPREF1058_RS18745	0.11	-0.9
83,388	-		HMPREF1058_RS18745	0.11	-0.3
83,392	+		HMPREF1058_RS18745	0.11	-0.1
83,407	+		HMPREF1058_RS18745	0.12	+1.1
83,407	+		HMPREF1058_RS18745	0.12	+1.2
83,407	+		HMPREF1058_RS18745	0.12	+0.4
83,413	+		HMPREF1058_RS18745	0.12	-0.6