Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS20205 and HMPREF1058_RS18585 are separated by 401 nucleotides HMPREF1058_RS18585 and HMPREF1058_RS18580 are separated by 30 nucleotides HMPREF1058_RS18580 and HMPREF1058_RS18575 are separated by 230 nucleotides HMPREF1058_RS18575 and HMPREF1058_RS18570 overlap by 8 nucleotides HMPREF1058_RS18570 and HMPREF1058_RS18565 overlap by 4 nucleotides
HMPREF1058_RS20205: HMPREF1058_RS20205 - energy transducer TonB, at 122,816 to 124,270
_RS20205
HMPREF1058_RS18585: HMPREF1058_RS18585 - tRNA-Asp, at 124,672 to 124,745
_RS18585
HMPREF1058_RS18580: HMPREF1058_RS18580 - tRNA-Asp, at 124,776 to 124,849
_RS18580
HMPREF1058_RS18575: HMPREF1058_RS18575 - YqgE/AlgH family protein, at 125,080 to 125,670
_RS18575
HMPREF1058_RS18570: HMPREF1058_RS18570 - GNAT family N-acetyltransferase, at 125,663 to 126,199
_RS18570
HMPREF1058_RS18565: HMPREF1058_RS18565 - hypothetical protein, at 126,196 to 126,666
_RS18565
Position (kb) 125
126 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 124.102 kb on + strand, within HMPREF1058_RS20205 at 124.102 kb on + strand, within HMPREF1058_RS20205 at 124.103 kb on - strand, within HMPREF1058_RS20205 at 124.105 kb on + strand, within HMPREF1058_RS20205 at 124.106 kb on - strand, within HMPREF1058_RS20205 at 124.108 kb on - strand, within HMPREF1058_RS20205 at 124.119 kb on + strand, within HMPREF1058_RS20205 at 124.210 kb on - strand at 124.215 kb on - strand at 124.216 kb on + strand at 124.217 kb on - strand at 124.222 kb on - strand at 124.226 kb on - strand at 124.226 kb on - strand at 124.226 kb on - strand at 124.244 kb on - strand at 124.336 kb on + strand at 124.353 kb on - strand at 124.360 kb on + strand at 124.439 kb on + strand at 124.440 kb on - strand at 124.446 kb on + strand at 124.509 kb on + strand at 124.510 kb on - strand at 124.572 kb on + strand at 124.979 kb on + strand at 124.984 kb on + strand at 125.037 kb on + strand at 125.038 kb on - strand at 125.043 kb on - strand at 125.046 kb on + strand at 125.046 kb on + strand at 125.047 kb on - strand at 125.047 kb on - strand at 125.047 kb on - strand at 125.047 kb on - strand at 125.048 kb on + strand at 125.176 kb on - strand, within HMPREF1058_RS18575 at 125.220 kb on + strand, within HMPREF1058_RS18575 at 125.226 kb on + strand, within HMPREF1058_RS18575 at 125.312 kb on - strand, within HMPREF1058_RS18575 at 125.434 kb on + strand, within HMPREF1058_RS18575 at 125.434 kb on + strand, within HMPREF1058_RS18575 at 125.435 kb on - strand, within HMPREF1058_RS18575 at 125.435 kb on - strand, within HMPREF1058_RS18575 at 125.436 kb on + strand, within HMPREF1058_RS18575 at 125.437 kb on - strand, within HMPREF1058_RS18575 at 125.437 kb on - strand, within HMPREF1058_RS18575 at 125.523 kb on - strand, within HMPREF1058_RS18575 at 125.591 kb on + strand, within HMPREF1058_RS18575 at 125.720 kb on - strand, within HMPREF1058_RS18570 at 125.806 kb on - strand, within HMPREF1058_RS18570 at 125.806 kb on - strand, within HMPREF1058_RS18570 at 125.952 kb on - strand, within HMPREF1058_RS18570 at 126.041 kb on + strand at 126.042 kb on - strand, within HMPREF1058_RS18570 at 126.045 kb on + strand, within HMPREF1058_RS18570 at 126.046 kb on - strand, within HMPREF1058_RS18570 at 126.382 kb on + strand, within HMPREF1058_RS18565 at 126.525 kb on - strand, within HMPREF1058_RS18565 at 126.525 kb on - strand, within HMPREF1058_RS18565 at 126.620 kb on + strand at 126.620 kb on + strand at 126.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 124,102 + HMPREF1058_RS20205 0.88 +1.2 124,102 + HMPREF1058_RS20205 0.88 +1.9 124,103 - HMPREF1058_RS20205 0.88 -0.9 124,105 + HMPREF1058_RS20205 0.89 +0.4 124,106 - HMPREF1058_RS20205 0.89 +1.4 124,108 - HMPREF1058_RS20205 0.89 -0.7 124,119 + HMPREF1058_RS20205 0.90 +1.4 124,210 - +0.4 124,215 - -0.7 124,216 + +1.2 124,217 - +0.6 124,222 - -0.6 124,226 - -1.6 124,226 - +0.9 124,226 - +0.2 124,244 - +2.8 124,336 + -3.5 124,353 - +1.1 124,360 + -1.4 124,439 + -1.4 124,440 - +1.9 124,446 + +1.0 124,509 + -1.3 124,510 - -1.1 124,572 + -3.3 124,979 + -1.1 124,984 + +1.0 125,037 + -1.4 125,038 - -0.7 125,043 - -0.4 125,046 + +1.4 125,046 + +0.1 125,047 - +0.1 125,047 - -0.3 125,047 - -1.3 125,047 - +0.4 125,048 + -0.9 125,176 - HMPREF1058_RS18575 0.16 -1.4 125,220 + HMPREF1058_RS18575 0.24 -2.1 125,226 + HMPREF1058_RS18575 0.25 -0.9 125,312 - HMPREF1058_RS18575 0.39 -3.5 125,434 + HMPREF1058_RS18575 0.60 -2.6 125,434 + HMPREF1058_RS18575 0.60 -0.3 125,435 - HMPREF1058_RS18575 0.60 -1.1 125,435 - HMPREF1058_RS18575 0.60 -0.3 125,436 + HMPREF1058_RS18575 0.60 +0.2 125,437 - HMPREF1058_RS18575 0.60 -2.5 125,437 - HMPREF1058_RS18575 0.60 -1.4 125,523 - HMPREF1058_RS18575 0.75 -0.4 125,591 + HMPREF1058_RS18575 0.86 -1.3 125,720 - HMPREF1058_RS18570 0.11 +1.3 125,806 - HMPREF1058_RS18570 0.27 +2.0 125,806 - HMPREF1058_RS18570 0.27 +1.5 125,952 - HMPREF1058_RS18570 0.54 -0.1 126,041 + -0.1 126,042 - HMPREF1058_RS18570 0.71 +0.4 126,045 + HMPREF1058_RS18570 0.71 -0.9 126,046 - HMPREF1058_RS18570 0.71 +0.2 126,382 + HMPREF1058_RS18565 0.39 +1.8 126,525 - HMPREF1058_RS18565 0.70 +2.3 126,525 - HMPREF1058_RS18565 0.70 +1.4 126,620 + +0.9 126,620 + +3.5 126,621 - +0.9
Or see this region's nucleotide sequence