Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18545 and HMPREF1058_RS18540 are separated by 94 nucleotides HMPREF1058_RS18540 and HMPREF1058_RS18535 overlap by 4 nucleotides HMPREF1058_RS18535 and HMPREF1058_RS18530 are separated by 182 nucleotides
HMPREF1058_RS18545: HMPREF1058_RS18545 - DEAD/DEAH box helicase family protein, at 129,533 to 131,845
_RS18545
HMPREF1058_RS18540: HMPREF1058_RS18540 - HEPN domain-containing protein, at 131,940 to 132,341
_RS18540
HMPREF1058_RS18535: HMPREF1058_RS18535 - nucleotidyltransferase domain-containing protein, at 132,338 to 132,646
_RS18535
HMPREF1058_RS18530: HMPREF1058_RS18530 - ATP-binding protein, at 132,829 to 134,397
_RS18530
Position (kb) 132
133 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 131.841 kb on + strand at 131.841 kb on + strand at 131.842 kb on - strand at 131.842 kb on - strand at 131.916 kb on - strand at 131.918 kb on + strand at 131.923 kb on - strand at 131.969 kb on + strand at 132.044 kb on - strand, within HMPREF1058_RS18540 at 132.080 kb on - strand, within HMPREF1058_RS18540 at 132.145 kb on - strand, within HMPREF1058_RS18540 at 132.206 kb on - strand, within HMPREF1058_RS18540 at 132.220 kb on + strand, within HMPREF1058_RS18540 at 132.220 kb on + strand, within HMPREF1058_RS18540 at 132.220 kb on + strand, within HMPREF1058_RS18540 at 132.220 kb on + strand, within HMPREF1058_RS18540 at 132.221 kb on - strand, within HMPREF1058_RS18540 at 132.221 kb on - strand, within HMPREF1058_RS18540 at 132.221 kb on - strand, within HMPREF1058_RS18540 at 132.228 kb on - strand, within HMPREF1058_RS18540 at 132.244 kb on + strand, within HMPREF1058_RS18540 at 132.260 kb on + strand, within HMPREF1058_RS18540 at 132.261 kb on - strand, within HMPREF1058_RS18540 at 132.280 kb on - strand, within HMPREF1058_RS18540 at 132.280 kb on - strand, within HMPREF1058_RS18540 at 132.307 kb on + strand at 132.309 kb on + strand at 132.310 kb on - strand at 132.310 kb on - strand at 132.364 kb on + strand at 132.458 kb on + strand, within HMPREF1058_RS18535 at 132.493 kb on + strand, within HMPREF1058_RS18535 at 132.647 kb on - strand at 132.730 kb on - strand at 132.741 kb on + strand at 132.815 kb on - strand at 132.821 kb on + strand at 132.822 kb on - strand at 132.822 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 131,841 + +1.3 131,841 + +0.4 131,842 - +4.2 131,842 - -2.7 131,916 - +1.4 131,918 + -2.5 131,923 - +1.9 131,969 + -0.3 132,044 - HMPREF1058_RS18540 0.26 -0.1 132,080 - HMPREF1058_RS18540 0.35 -1.0 132,145 - HMPREF1058_RS18540 0.51 +0.1 132,206 - HMPREF1058_RS18540 0.66 -1.1 132,220 + HMPREF1058_RS18540 0.70 +0.7 132,220 + HMPREF1058_RS18540 0.70 +0.9 132,220 + HMPREF1058_RS18540 0.70 +0.2 132,220 + HMPREF1058_RS18540 0.70 -0.4 132,221 - HMPREF1058_RS18540 0.70 -1.6 132,221 - HMPREF1058_RS18540 0.70 -0.1 132,221 - HMPREF1058_RS18540 0.70 -0.3 132,228 - HMPREF1058_RS18540 0.72 -0.8 132,244 + HMPREF1058_RS18540 0.76 +1.9 132,260 + HMPREF1058_RS18540 0.80 -0.5 132,261 - HMPREF1058_RS18540 0.80 -0.7 132,280 - HMPREF1058_RS18540 0.85 -0.8 132,280 - HMPREF1058_RS18540 0.85 +2.3 132,307 + +1.1 132,309 + -1.7 132,310 - -0.8 132,310 - +0.0 132,364 + +1.5 132,458 + HMPREF1058_RS18535 0.39 -1.4 132,493 + HMPREF1058_RS18535 0.50 -2.1 132,647 - -2.3 132,730 - -1.4 132,741 + -0.7 132,815 - +1.3 132,821 + +3.0 132,822 - +0.1 132,822 - +1.9
Or see this region's nucleotide sequence