Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18390 and HMPREF1058_RS18385 are separated by 10 nucleotides HMPREF1058_RS18385 and HMPREF1058_RS18380 are separated by 5 nucleotides
HMPREF1058_RS18390: HMPREF1058_RS18390 - right-handed parallel beta-helix repeat-containing protein, at 168,322 to 170,202
_RS18390
HMPREF1058_RS18385: HMPREF1058_RS18385 - alpha-xylosidase, at 170,213 to 172,459
_RS18385
HMPREF1058_RS18380: HMPREF1058_RS18380 - cobalamin-binding protein, at 172,465 to 174,267
_RS18380
Position (kb) 170
171
172
173 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 169.265 kb on + strand, within HMPREF1058_RS18390 at 169.281 kb on - strand, within HMPREF1058_RS18390 at 169.315 kb on + strand, within HMPREF1058_RS18390 at 169.363 kb on + strand, within HMPREF1058_RS18390 at 169.364 kb on - strand, within HMPREF1058_RS18390 at 169.371 kb on - strand, within HMPREF1058_RS18390 at 169.443 kb on - strand, within HMPREF1058_RS18390 at 169.449 kb on - strand, within HMPREF1058_RS18390 at 169.517 kb on - strand, within HMPREF1058_RS18390 at 169.631 kb on - strand, within HMPREF1058_RS18390 at 169.632 kb on + strand, within HMPREF1058_RS18390 at 169.633 kb on - strand, within HMPREF1058_RS18390 at 169.633 kb on - strand, within HMPREF1058_RS18390 at 169.655 kb on + strand, within HMPREF1058_RS18390 at 169.655 kb on + strand at 169.655 kb on + strand, within HMPREF1058_RS18390 at 169.656 kb on - strand, within HMPREF1058_RS18390 at 169.722 kb on - strand, within HMPREF1058_RS18390 at 169.738 kb on + strand, within HMPREF1058_RS18390 at 169.742 kb on + strand, within HMPREF1058_RS18390 at 169.760 kb on + strand, within HMPREF1058_RS18390 at 169.794 kb on + strand, within HMPREF1058_RS18390 at 169.795 kb on - strand, within HMPREF1058_RS18390 at 169.862 kb on - strand, within HMPREF1058_RS18390 at 169.906 kb on + strand, within HMPREF1058_RS18390 at 169.906 kb on + strand, within HMPREF1058_RS18390 at 169.907 kb on - strand, within HMPREF1058_RS18390 at 169.961 kb on + strand, within HMPREF1058_RS18390 at 169.962 kb on - strand, within HMPREF1058_RS18390 at 169.999 kb on + strand, within HMPREF1058_RS18390 at 169.999 kb on + strand, within HMPREF1058_RS18390 at 170.006 kb on - strand, within HMPREF1058_RS18390 at 170.091 kb on + strand at 170.091 kb on + strand at 170.092 kb on - strand at 170.130 kb on + strand at 170.159 kb on + strand at 170.294 kb on + strand at 170.294 kb on + strand at 170.294 kb on + strand at 170.329 kb on + strand at 170.409 kb on - strand at 170.429 kb on + strand at 170.597 kb on - strand, within HMPREF1058_RS18385 at 170.605 kb on - strand, within HMPREF1058_RS18385 at 170.605 kb on - strand, within HMPREF1058_RS18385 at 170.859 kb on + strand, within HMPREF1058_RS18385 at 170.880 kb on + strand, within HMPREF1058_RS18385 at 170.921 kb on + strand, within HMPREF1058_RS18385 at 170.921 kb on + strand, within HMPREF1058_RS18385 at 170.921 kb on + strand, within HMPREF1058_RS18385 at 170.924 kb on - strand, within HMPREF1058_RS18385 at 170.970 kb on - strand, within HMPREF1058_RS18385 at 171.201 kb on + strand, within HMPREF1058_RS18385 at 171.428 kb on + strand, within HMPREF1058_RS18385 at 171.430 kb on + strand, within HMPREF1058_RS18385 at 171.430 kb on + strand, within HMPREF1058_RS18385 at 171.432 kb on + strand at 171.433 kb on - strand, within HMPREF1058_RS18385 at 171.433 kb on - strand, within HMPREF1058_RS18385 at 171.533 kb on + strand, within HMPREF1058_RS18385 at 171.656 kb on + strand, within HMPREF1058_RS18385 at 171.905 kb on - strand, within HMPREF1058_RS18385 at 171.921 kb on + strand, within HMPREF1058_RS18385 at 171.921 kb on + strand, within HMPREF1058_RS18385 at 171.921 kb on + strand, within HMPREF1058_RS18385 at 171.922 kb on - strand, within HMPREF1058_RS18385 at 171.922 kb on - strand, within HMPREF1058_RS18385 at 171.922 kb on - strand, within HMPREF1058_RS18385 at 171.923 kb on + strand, within HMPREF1058_RS18385 at 171.924 kb on - strand, within HMPREF1058_RS18385 at 171.924 kb on - strand, within HMPREF1058_RS18385 at 171.925 kb on + strand, within HMPREF1058_RS18385 at 172.048 kb on + strand, within HMPREF1058_RS18385 at 172.055 kb on - strand, within HMPREF1058_RS18385 at 172.057 kb on - strand, within HMPREF1058_RS18385 at 172.057 kb on - strand, within HMPREF1058_RS18385 at 172.057 kb on - strand, within HMPREF1058_RS18385 at 172.061 kb on + strand, within HMPREF1058_RS18385 at 172.061 kb on + strand, within HMPREF1058_RS18385 at 172.061 kb on + strand, within HMPREF1058_RS18385 at 172.061 kb on + strand at 172.061 kb on + strand, within HMPREF1058_RS18385 at 172.063 kb on + strand, within HMPREF1058_RS18385 at 172.063 kb on + strand, within HMPREF1058_RS18385 at 172.063 kb on + strand, within HMPREF1058_RS18385 at 172.064 kb on - strand, within HMPREF1058_RS18385 at 172.064 kb on - strand, within HMPREF1058_RS18385 at 172.334 kb on + strand at 172.334 kb on + strand at 172.335 kb on - strand at 172.427 kb on + strand at 172.509 kb on + strand at 172.862 kb on + strand, within HMPREF1058_RS18380 at 172.982 kb on + strand, within HMPREF1058_RS18380 at 173.032 kb on + strand, within HMPREF1058_RS18380 at 173.033 kb on - strand, within HMPREF1058_RS18380
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 169,265 + HMPREF1058_RS18390 0.50 +0.3 169,281 - HMPREF1058_RS18390 0.51 -2.7 169,315 + HMPREF1058_RS18390 0.53 -1.9 169,363 + HMPREF1058_RS18390 0.55 +0.0 169,364 - HMPREF1058_RS18390 0.55 +0.0 169,371 - HMPREF1058_RS18390 0.56 -1.1 169,443 - HMPREF1058_RS18390 0.60 -1.1 169,449 - HMPREF1058_RS18390 0.60 -2.9 169,517 - HMPREF1058_RS18390 0.64 +1.1 169,631 - HMPREF1058_RS18390 0.70 -1.3 169,632 + HMPREF1058_RS18390 0.70 -3.6 169,633 - HMPREF1058_RS18390 0.70 -3.7 169,633 - HMPREF1058_RS18390 0.70 -0.5 169,655 + HMPREF1058_RS18390 0.71 -1.8 169,655 + -0.3 169,655 + HMPREF1058_RS18390 0.71 +1.3 169,656 - HMPREF1058_RS18390 0.71 +1.3 169,722 - HMPREF1058_RS18390 0.74 -0.6 169,738 + HMPREF1058_RS18390 0.75 +1.0 169,742 + HMPREF1058_RS18390 0.75 -0.0 169,760 + HMPREF1058_RS18390 0.76 -0.8 169,794 + HMPREF1058_RS18390 0.78 +0.3 169,795 - HMPREF1058_RS18390 0.78 -1.6 169,862 - HMPREF1058_RS18390 0.82 -1.4 169,906 + HMPREF1058_RS18390 0.84 -1.2 169,906 + HMPREF1058_RS18390 0.84 +0.9 169,907 - HMPREF1058_RS18390 0.84 -0.9 169,961 + HMPREF1058_RS18390 0.87 -1.4 169,962 - HMPREF1058_RS18390 0.87 +0.2 169,999 + HMPREF1058_RS18390 0.89 -0.6 169,999 + HMPREF1058_RS18390 0.89 +0.1 170,006 - HMPREF1058_RS18390 0.90 +0.2 170,091 + +0.9 170,091 + -1.0 170,092 - -0.1 170,130 + -2.1 170,159 + -1.2 170,294 + -1.1 170,294 + -3.2 170,294 + +0.4 170,329 + +1.3 170,409 - -0.7 170,429 + -2.7 170,597 - HMPREF1058_RS18385 0.17 -0.6 170,605 - HMPREF1058_RS18385 0.17 -1.9 170,605 - HMPREF1058_RS18385 0.17 -0.8 170,859 + HMPREF1058_RS18385 0.29 -1.9 170,880 + HMPREF1058_RS18385 0.30 -2.1 170,921 + HMPREF1058_RS18385 0.32 -2.4 170,921 + HMPREF1058_RS18385 0.32 +2.2 170,921 + HMPREF1058_RS18385 0.32 -1.0 170,924 - HMPREF1058_RS18385 0.32 -1.1 170,970 - HMPREF1058_RS18385 0.34 +0.4 171,201 + HMPREF1058_RS18385 0.44 -2.0 171,428 + HMPREF1058_RS18385 0.54 -1.8 171,430 + HMPREF1058_RS18385 0.54 +2.3 171,430 + HMPREF1058_RS18385 0.54 +0.9 171,432 + -0.3 171,433 - HMPREF1058_RS18385 0.54 +1.0 171,433 - HMPREF1058_RS18385 0.54 -1.9 171,533 + HMPREF1058_RS18385 0.59 -1.1 171,656 + HMPREF1058_RS18385 0.64 +0.2 171,905 - HMPREF1058_RS18385 0.75 -0.0 171,921 + HMPREF1058_RS18385 0.76 +0.4 171,921 + HMPREF1058_RS18385 0.76 -0.9 171,921 + HMPREF1058_RS18385 0.76 -0.7 171,922 - HMPREF1058_RS18385 0.76 -1.8 171,922 - HMPREF1058_RS18385 0.76 -0.7 171,922 - HMPREF1058_RS18385 0.76 -2.2 171,923 + HMPREF1058_RS18385 0.76 -0.3 171,924 - HMPREF1058_RS18385 0.76 -2.3 171,924 - HMPREF1058_RS18385 0.76 +2.1 171,925 + HMPREF1058_RS18385 0.76 -1.3 172,048 + HMPREF1058_RS18385 0.82 +2.3 172,055 - HMPREF1058_RS18385 0.82 -1.8 172,057 - HMPREF1058_RS18385 0.82 +0.1 172,057 - HMPREF1058_RS18385 0.82 +0.5 172,057 - HMPREF1058_RS18385 0.82 -1.2 172,061 + HMPREF1058_RS18385 0.82 -1.5 172,061 + HMPREF1058_RS18385 0.82 -2.1 172,061 + HMPREF1058_RS18385 0.82 -1.8 172,061 + -1.1 172,061 + HMPREF1058_RS18385 0.82 -1.5 172,063 + HMPREF1058_RS18385 0.82 -1.9 172,063 + HMPREF1058_RS18385 0.82 -0.6 172,063 + HMPREF1058_RS18385 0.82 -3.8 172,064 - HMPREF1058_RS18385 0.82 -1.4 172,064 - HMPREF1058_RS18385 0.82 -1.6 172,334 + -2.2 172,334 + -1.6 172,335 - +0.4 172,427 + -0.5 172,509 + -0.1 172,862 + HMPREF1058_RS18380 0.22 -0.0 172,982 + HMPREF1058_RS18380 0.29 +3.0 173,032 + HMPREF1058_RS18380 0.31 -1.5 173,033 - HMPREF1058_RS18380 0.32 -0.3
Or see this region's nucleotide sequence