Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS18060 and HMPREF1058_RS18055 are separated by 24 nucleotides HMPREF1058_RS18055 and HMPREF1058_RS18050 are separated by 153 nucleotides HMPREF1058_RS18050 and HMPREF1058_RS18045 are separated by 23 nucleotides
HMPREF1058_RS18060: HMPREF1058_RS18060 - efflux RND transporter periplasmic adaptor subunit, at 266,446 to 267,669
_RS18060
HMPREF1058_RS18055: HMPREF1058_RS18055 - TolC family protein, at 267,694 to 269,037
_RS18055
HMPREF1058_RS18050: HMPREF1058_RS18050 - DUF4492 domain-containing protein, at 269,191 to 269,409
_RS18050
HMPREF1058_RS18045: HMPREF1058_RS18045 - cytochrome ubiquinol oxidase subunit I, at 269,433 to 270,935
_RS18045
Position (kb) 267
268
269
270 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 266.716 kb on + strand, within HMPREF1058_RS18060 at 266.717 kb on - strand, within HMPREF1058_RS18060 at 266.770 kb on - strand, within HMPREF1058_RS18060 at 266.784 kb on + strand, within HMPREF1058_RS18060 at 266.851 kb on + strand, within HMPREF1058_RS18060 at 266.858 kb on + strand, within HMPREF1058_RS18060 at 266.858 kb on + strand, within HMPREF1058_RS18060 at 266.866 kb on + strand, within HMPREF1058_RS18060 at 266.866 kb on + strand, within HMPREF1058_RS18060 at 266.867 kb on - strand, within HMPREF1058_RS18060 at 266.875 kb on - strand, within HMPREF1058_RS18060 at 266.913 kb on + strand, within HMPREF1058_RS18060 at 267.168 kb on - strand, within HMPREF1058_RS18060 at 267.324 kb on - strand, within HMPREF1058_RS18060 at 267.351 kb on - strand, within HMPREF1058_RS18060 at 267.351 kb on - strand, within HMPREF1058_RS18060 at 267.446 kb on + strand, within HMPREF1058_RS18060 at 267.540 kb on + strand, within HMPREF1058_RS18060 at 267.541 kb on - strand, within HMPREF1058_RS18060 at 267.673 kb on - strand at 267.674 kb on + strand at 267.674 kb on + strand at 267.677 kb on + strand at 267.682 kb on - strand at 267.698 kb on - strand at 267.753 kb on + strand at 267.754 kb on - strand at 267.755 kb on + strand at 267.756 kb on - strand at 267.769 kb on - strand at 267.864 kb on - strand, within HMPREF1058_RS18055 at 267.888 kb on + strand, within HMPREF1058_RS18055 at 267.888 kb on + strand, within HMPREF1058_RS18055 at 267.946 kb on + strand, within HMPREF1058_RS18055 at 267.948 kb on + strand, within HMPREF1058_RS18055 at 267.993 kb on + strand, within HMPREF1058_RS18055 at 268.065 kb on + strand, within HMPREF1058_RS18055 at 268.080 kb on + strand, within HMPREF1058_RS18055 at 268.117 kb on - strand, within HMPREF1058_RS18055 at 268.117 kb on - strand, within HMPREF1058_RS18055 at 268.198 kb on + strand, within HMPREF1058_RS18055 at 268.219 kb on + strand, within HMPREF1058_RS18055 at 268.271 kb on + strand, within HMPREF1058_RS18055 at 268.439 kb on - strand, within HMPREF1058_RS18055 at 268.511 kb on + strand, within HMPREF1058_RS18055 at 268.515 kb on + strand, within HMPREF1058_RS18055 at 268.573 kb on + strand, within HMPREF1058_RS18055 at 268.574 kb on - strand, within HMPREF1058_RS18055 at 268.585 kb on + strand, within HMPREF1058_RS18055 at 268.724 kb on + strand, within HMPREF1058_RS18055 at 268.734 kb on + strand, within HMPREF1058_RS18055 at 268.734 kb on + strand, within HMPREF1058_RS18055 at 268.736 kb on + strand, within HMPREF1058_RS18055 at 268.736 kb on + strand, within HMPREF1058_RS18055 at 268.737 kb on - strand, within HMPREF1058_RS18055 at 268.747 kb on - strand, within HMPREF1058_RS18055 at 269.019 kb on - strand at 269.021 kb on - strand at 269.021 kb on - strand at 269.062 kb on + strand at 269.071 kb on - strand at 269.164 kb on + strand at 269.227 kb on + strand, within HMPREF1058_RS18050 at 269.291 kb on + strand, within HMPREF1058_RS18050 at 269.307 kb on + strand, within HMPREF1058_RS18050 at 269.372 kb on - strand, within HMPREF1058_RS18050 at 269.391 kb on - strand at 269.499 kb on + strand at 269.499 kb on + strand at 269.500 kb on - strand at 269.533 kb on + strand at 269.533 kb on + strand at 269.543 kb on - strand at 269.641 kb on + strand, within HMPREF1058_RS18045 at 269.641 kb on + strand, within HMPREF1058_RS18045 at 269.685 kb on - strand, within HMPREF1058_RS18045 at 269.693 kb on + strand, within HMPREF1058_RS18045 at 269.697 kb on + strand, within HMPREF1058_RS18045 at 269.698 kb on - strand, within HMPREF1058_RS18045 at 269.905 kb on - strand, within HMPREF1058_RS18045 at 270.013 kb on + strand, within HMPREF1058_RS18045
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 266,716 + HMPREF1058_RS18060 0.22 +0.9 266,717 - HMPREF1058_RS18060 0.22 -1.1 266,770 - HMPREF1058_RS18060 0.26 +0.2 266,784 + HMPREF1058_RS18060 0.28 -0.9 266,851 + HMPREF1058_RS18060 0.33 -1.2 266,858 + HMPREF1058_RS18060 0.34 +0.1 266,858 + HMPREF1058_RS18060 0.34 +0.1 266,866 + HMPREF1058_RS18060 0.34 -0.1 266,866 + HMPREF1058_RS18060 0.34 +1.7 266,867 - HMPREF1058_RS18060 0.34 +0.3 266,875 - HMPREF1058_RS18060 0.35 +1.5 266,913 + HMPREF1058_RS18060 0.38 -1.4 267,168 - HMPREF1058_RS18060 0.59 -0.9 267,324 - HMPREF1058_RS18060 0.72 -0.6 267,351 - HMPREF1058_RS18060 0.74 +0.8 267,351 - HMPREF1058_RS18060 0.74 -0.1 267,446 + HMPREF1058_RS18060 0.82 +0.3 267,540 + HMPREF1058_RS18060 0.89 -0.5 267,541 - HMPREF1058_RS18060 0.89 +0.2 267,673 - -0.4 267,674 + +0.0 267,674 + +1.2 267,677 + -1.1 267,682 - +2.5 267,698 - -1.6 267,753 + -2.1 267,754 - -2.2 267,755 + -1.0 267,756 - +0.2 267,769 - +2.3 267,864 - HMPREF1058_RS18055 0.13 -1.0 267,888 + HMPREF1058_RS18055 0.14 +0.2 267,888 + HMPREF1058_RS18055 0.14 -2.6 267,946 + HMPREF1058_RS18055 0.19 -0.7 267,948 + HMPREF1058_RS18055 0.19 -1.7 267,993 + HMPREF1058_RS18055 0.22 -1.2 268,065 + HMPREF1058_RS18055 0.28 -2.2 268,080 + HMPREF1058_RS18055 0.29 +1.4 268,117 - HMPREF1058_RS18055 0.31 +2.8 268,117 - HMPREF1058_RS18055 0.31 -1.1 268,198 + HMPREF1058_RS18055 0.38 -1.0 268,219 + HMPREF1058_RS18055 0.39 -0.9 268,271 + HMPREF1058_RS18055 0.43 -1.1 268,439 - HMPREF1058_RS18055 0.55 -0.5 268,511 + HMPREF1058_RS18055 0.61 -1.8 268,515 + HMPREF1058_RS18055 0.61 -0.4 268,573 + HMPREF1058_RS18055 0.65 -1.7 268,574 - HMPREF1058_RS18055 0.65 -0.4 268,585 + HMPREF1058_RS18055 0.66 -1.2 268,724 + HMPREF1058_RS18055 0.77 -1.9 268,734 + HMPREF1058_RS18055 0.77 -1.4 268,734 + HMPREF1058_RS18055 0.77 +0.1 268,736 + HMPREF1058_RS18055 0.78 -1.2 268,736 + HMPREF1058_RS18055 0.78 -0.5 268,737 - HMPREF1058_RS18055 0.78 -2.2 268,747 - HMPREF1058_RS18055 0.78 -0.1 269,019 - +0.0 269,021 - -1.3 269,021 - +0.8 269,062 + +0.0 269,071 - +1.2 269,164 + -1.9 269,227 + HMPREF1058_RS18050 0.16 +1.3 269,291 + HMPREF1058_RS18050 0.46 +3.9 269,307 + HMPREF1058_RS18050 0.53 -0.7 269,372 - HMPREF1058_RS18050 0.83 -2.4 269,391 - +1.9 269,499 + +0.2 269,499 + -0.7 269,500 - +0.5 269,533 + -1.9 269,533 + -1.0 269,543 - +1.3 269,641 + HMPREF1058_RS18045 0.14 +0.9 269,641 + HMPREF1058_RS18045 0.14 -2.8 269,685 - HMPREF1058_RS18045 0.17 -0.6 269,693 + HMPREF1058_RS18045 0.17 -1.1 269,697 + HMPREF1058_RS18045 0.18 -0.4 269,698 - HMPREF1058_RS18045 0.18 -3.6 269,905 - HMPREF1058_RS18045 0.31 -1.2 270,013 + HMPREF1058_RS18045 0.39 +2.7
Or see this region's nucleotide sequence