Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17975 and HMPREF1058_RS17970 are separated by 14 nucleotides HMPREF1058_RS17970 and HMPREF1058_RS17965 are separated by 11 nucleotides HMPREF1058_RS17965 and HMPREF1058_RS17960 overlap by 4 nucleotides
HMPREF1058_RS17975: HMPREF1058_RS17975 - ATP-dependent dethiobiotin synthetase BioD, at 288,824 to 289,468
_RS17975
HMPREF1058_RS17970: HMPREF1058_RS17970 - malonyl-ACP O-methyltransferase BioC, at 289,483 to 290,238
_RS17970
HMPREF1058_RS17965: HMPREF1058_RS17965 - DUF452 family protein, at 290,250 to 290,903
_RS17965
HMPREF1058_RS17960: HMPREF1058_RS17960 - 8-amino-7-oxononanoate synthase, at 290,900 to 292,051
_RS17960
Position (kb) 290
291 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 289.278 kb on + strand, within HMPREF1058_RS17975 at 289.279 kb on - strand, within HMPREF1058_RS17975 at 289.363 kb on + strand, within HMPREF1058_RS17975 at 289.367 kb on - strand, within HMPREF1058_RS17975 at 289.454 kb on + strand at 289.507 kb on - strand at 289.508 kb on + strand at 289.509 kb on - strand at 289.512 kb on + strand at 289.512 kb on + strand at 289.709 kb on + strand, within HMPREF1058_RS17970 at 289.710 kb on - strand, within HMPREF1058_RS17970 at 289.846 kb on - strand, within HMPREF1058_RS17970 at 289.848 kb on + strand, within HMPREF1058_RS17970 at 289.849 kb on - strand, within HMPREF1058_RS17970 at 289.904 kb on - strand, within HMPREF1058_RS17970 at 290.017 kb on - strand, within HMPREF1058_RS17970 at 290.123 kb on + strand, within HMPREF1058_RS17970 at 290.124 kb on - strand, within HMPREF1058_RS17970 at 290.132 kb on - strand, within HMPREF1058_RS17970 at 290.155 kb on + strand, within HMPREF1058_RS17970 at 290.230 kb on - strand at 290.251 kb on + strand at 290.306 kb on + strand at 290.307 kb on - strand at 290.383 kb on - strand, within HMPREF1058_RS17965 at 290.657 kb on + strand, within HMPREF1058_RS17965 at 290.924 kb on + strand at 291.012 kb on + strand at 291.095 kb on - strand, within HMPREF1058_RS17960 at 291.303 kb on + strand, within HMPREF1058_RS17960 at 291.303 kb on + strand, within HMPREF1058_RS17960 at 291.303 kb on + strand, within HMPREF1058_RS17960 at 291.435 kb on + strand, within HMPREF1058_RS17960 at 291.443 kb on + strand, within HMPREF1058_RS17960 at 291.443 kb on + strand, within HMPREF1058_RS17960 at 291.443 kb on + strand, within HMPREF1058_RS17960 at 291.444 kb on - strand, within HMPREF1058_RS17960 at 291.444 kb on - strand, within HMPREF1058_RS17960 at 291.454 kb on - strand, within HMPREF1058_RS17960 at 291.530 kb on - strand, within HMPREF1058_RS17960 at 291.533 kb on + strand, within HMPREF1058_RS17960 at 291.533 kb on + strand, within HMPREF1058_RS17960 at 291.534 kb on - strand, within HMPREF1058_RS17960 at 291.539 kb on - strand, within HMPREF1058_RS17960 at 291.731 kb on - strand, within HMPREF1058_RS17960 at 291.793 kb on - strand, within HMPREF1058_RS17960 at 291.793 kb on - strand, within HMPREF1058_RS17960 at 291.796 kb on + strand, within HMPREF1058_RS17960 at 291.882 kb on - strand, within HMPREF1058_RS17960
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 289,278 + HMPREF1058_RS17975 0.70 +0.8 289,279 - HMPREF1058_RS17975 0.71 -2.1 289,363 + HMPREF1058_RS17975 0.84 +2.2 289,367 - HMPREF1058_RS17975 0.84 +0.6 289,454 + +0.9 289,507 - -0.1 289,508 + +0.7 289,509 - +1.4 289,512 + +0.6 289,512 + -2.1 289,709 + HMPREF1058_RS17970 0.30 +1.4 289,710 - HMPREF1058_RS17970 0.30 -0.2 289,846 - HMPREF1058_RS17970 0.48 -0.3 289,848 + HMPREF1058_RS17970 0.48 -2.8 289,849 - HMPREF1058_RS17970 0.48 +0.4 289,904 - HMPREF1058_RS17970 0.56 +0.1 290,017 - HMPREF1058_RS17970 0.71 +0.5 290,123 + HMPREF1058_RS17970 0.85 +0.9 290,124 - HMPREF1058_RS17970 0.85 +1.0 290,132 - HMPREF1058_RS17970 0.86 +0.8 290,155 + HMPREF1058_RS17970 0.89 -1.1 290,230 - +0.5 290,251 + -0.1 290,306 + -0.0 290,307 - +0.5 290,383 - HMPREF1058_RS17965 0.20 -0.6 290,657 + HMPREF1058_RS17965 0.62 -2.7 290,924 + +1.2 291,012 + +0.8 291,095 - HMPREF1058_RS17960 0.17 -1.9 291,303 + HMPREF1058_RS17960 0.35 +0.6 291,303 + HMPREF1058_RS17960 0.35 +0.3 291,303 + HMPREF1058_RS17960 0.35 -1.5 291,435 + HMPREF1058_RS17960 0.46 -0.8 291,443 + HMPREF1058_RS17960 0.47 -0.4 291,443 + HMPREF1058_RS17960 0.47 -0.2 291,443 + HMPREF1058_RS17960 0.47 -1.0 291,444 - HMPREF1058_RS17960 0.47 +2.8 291,444 - HMPREF1058_RS17960 0.47 +0.2 291,454 - HMPREF1058_RS17960 0.48 +2.8 291,530 - HMPREF1058_RS17960 0.55 -0.4 291,533 + HMPREF1058_RS17960 0.55 -1.1 291,533 + HMPREF1058_RS17960 0.55 +1.8 291,534 - HMPREF1058_RS17960 0.55 -2.3 291,539 - HMPREF1058_RS17960 0.55 -0.5 291,731 - HMPREF1058_RS17960 0.72 -0.7 291,793 - HMPREF1058_RS17960 0.78 -0.1 291,793 - HMPREF1058_RS17960 0.78 -2.2 291,796 + HMPREF1058_RS17960 0.78 +0.6 291,882 - HMPREF1058_RS17960 0.85 +1.2
Or see this region's nucleotide sequence