Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17780 and HMPREF1058_RS17775 are separated by 10 nucleotides HMPREF1058_RS17775 and HMPREF1058_RS17770 are separated by 221 nucleotides
HMPREF1058_RS17780: HMPREF1058_RS17780 - clostripain, at 336,703 to 337,965
_RS17780
HMPREF1058_RS17775: HMPREF1058_RS17775 - hypothetical protein, at 337,976 to 338,371
_RS17775
HMPREF1058_RS17770: HMPREF1058_RS17770 - RNA polymerase sigma factor RpoD/SigA, at 338,593 to 339,453
_RS17770
Position (kb) 337
338
339 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 336.980 kb on + strand, within HMPREF1058_RS17780 at 337.145 kb on + strand, within HMPREF1058_RS17780 at 337.145 kb on + strand, within HMPREF1058_RS17780 at 337.145 kb on + strand, within HMPREF1058_RS17780 at 337.145 kb on + strand, within HMPREF1058_RS17780 at 337.146 kb on - strand, within HMPREF1058_RS17780 at 337.146 kb on - strand, within HMPREF1058_RS17780 at 337.163 kb on + strand, within HMPREF1058_RS17780 at 337.209 kb on - strand, within HMPREF1058_RS17780 at 337.254 kb on + strand, within HMPREF1058_RS17780 at 337.277 kb on + strand, within HMPREF1058_RS17780 at 337.302 kb on - strand, within HMPREF1058_RS17780 at 337.305 kb on - strand, within HMPREF1058_RS17780 at 337.327 kb on - strand, within HMPREF1058_RS17780 at 337.327 kb on - strand, within HMPREF1058_RS17780 at 337.367 kb on - strand, within HMPREF1058_RS17780 at 337.441 kb on - strand, within HMPREF1058_RS17780 at 337.496 kb on - strand, within HMPREF1058_RS17780 at 337.531 kb on - strand, within HMPREF1058_RS17780 at 337.623 kb on + strand, within HMPREF1058_RS17780 at 337.623 kb on + strand, within HMPREF1058_RS17780 at 337.624 kb on - strand, within HMPREF1058_RS17780 at 337.624 kb on - strand, within HMPREF1058_RS17780 at 337.624 kb on - strand, within HMPREF1058_RS17780 at 337.624 kb on - strand, within HMPREF1058_RS17780 at 337.624 kb on - strand, within HMPREF1058_RS17780 at 337.630 kb on - strand, within HMPREF1058_RS17780 at 337.654 kb on + strand, within HMPREF1058_RS17780 at 337.655 kb on - strand, within HMPREF1058_RS17780 at 337.666 kb on - strand, within HMPREF1058_RS17780 at 337.699 kb on + strand, within HMPREF1058_RS17780 at 337.703 kb on + strand, within HMPREF1058_RS17780 at 337.704 kb on - strand, within HMPREF1058_RS17780 at 337.760 kb on - strand, within HMPREF1058_RS17780 at 337.816 kb on - strand, within HMPREF1058_RS17780 at 338.166 kb on + strand, within HMPREF1058_RS17775 at 338.197 kb on + strand, within HMPREF1058_RS17775 at 338.198 kb on - strand, within HMPREF1058_RS17775 at 338.279 kb on + strand, within HMPREF1058_RS17775 at 338.282 kb on + strand, within HMPREF1058_RS17775 at 338.282 kb on + strand, within HMPREF1058_RS17775 at 338.284 kb on + strand, within HMPREF1058_RS17775 at 338.285 kb on - strand, within HMPREF1058_RS17775 at 338.286 kb on + strand, within HMPREF1058_RS17775 at 338.287 kb on - strand, within HMPREF1058_RS17775 at 338.325 kb on - strand, within HMPREF1058_RS17775 at 338.371 kb on + strand at 338.372 kb on - strand at 338.377 kb on + strand at 338.386 kb on - strand at 338.411 kb on + strand at 338.416 kb on - strand at 338.447 kb on + strand at 338.448 kb on - strand at 338.456 kb on + strand at 338.490 kb on + strand at 338.516 kb on - strand at 338.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 336,980 + HMPREF1058_RS17780 0.22 -3.7 337,145 + HMPREF1058_RS17780 0.35 -0.6 337,145 + HMPREF1058_RS17780 0.35 +0.2 337,145 + HMPREF1058_RS17780 0.35 -1.9 337,145 + HMPREF1058_RS17780 0.35 -0.5 337,146 - HMPREF1058_RS17780 0.35 -3.2 337,146 - HMPREF1058_RS17780 0.35 +0.7 337,163 + HMPREF1058_RS17780 0.36 +0.8 337,209 - HMPREF1058_RS17780 0.40 -0.2 337,254 + HMPREF1058_RS17780 0.44 -2.7 337,277 + HMPREF1058_RS17780 0.45 +0.0 337,302 - HMPREF1058_RS17780 0.47 -1.3 337,305 - HMPREF1058_RS17780 0.48 -1.0 337,327 - HMPREF1058_RS17780 0.49 +0.1 337,327 - HMPREF1058_RS17780 0.49 +1.3 337,367 - HMPREF1058_RS17780 0.53 +1.4 337,441 - HMPREF1058_RS17780 0.58 -2.3 337,496 - HMPREF1058_RS17780 0.63 -2.2 337,531 - HMPREF1058_RS17780 0.66 -2.0 337,623 + HMPREF1058_RS17780 0.73 -0.3 337,623 + HMPREF1058_RS17780 0.73 -0.3 337,624 - HMPREF1058_RS17780 0.73 +0.1 337,624 - HMPREF1058_RS17780 0.73 +0.6 337,624 - HMPREF1058_RS17780 0.73 -1.0 337,624 - HMPREF1058_RS17780 0.73 -1.1 337,624 - HMPREF1058_RS17780 0.73 -0.6 337,630 - HMPREF1058_RS17780 0.73 -0.0 337,654 + HMPREF1058_RS17780 0.75 -2.6 337,655 - HMPREF1058_RS17780 0.75 -2.8 337,666 - HMPREF1058_RS17780 0.76 -1.0 337,699 + HMPREF1058_RS17780 0.79 +0.4 337,703 + HMPREF1058_RS17780 0.79 +0.9 337,704 - HMPREF1058_RS17780 0.79 +0.4 337,760 - HMPREF1058_RS17780 0.84 -4.4 337,816 - HMPREF1058_RS17780 0.88 -0.8 338,166 + HMPREF1058_RS17775 0.48 -0.8 338,197 + HMPREF1058_RS17775 0.56 -1.3 338,198 - HMPREF1058_RS17775 0.56 -0.2 338,279 + HMPREF1058_RS17775 0.77 -0.7 338,282 + HMPREF1058_RS17775 0.77 -2.8 338,282 + HMPREF1058_RS17775 0.77 -0.6 338,284 + HMPREF1058_RS17775 0.78 -0.7 338,285 - HMPREF1058_RS17775 0.78 +0.0 338,286 + HMPREF1058_RS17775 0.78 -2.5 338,287 - HMPREF1058_RS17775 0.79 -1.0 338,325 - HMPREF1058_RS17775 0.88 -0.8 338,371 + -0.5 338,372 - +1.8 338,377 + -1.0 338,386 - -1.5 338,411 + +1.8 338,416 - -2.9 338,447 + +0.7 338,448 - +0.6 338,456 + -0.2 338,490 + -0.5 338,516 - -0.6 338,521 - +0.0
Or see this region's nucleotide sequence