Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17765 and HMPREF1058_RS17760 are separated by 321 nucleotides HMPREF1058_RS17760 and HMPREF1058_RS17755 are separated by 92 nucleotides
HMPREF1058_RS17765: HMPREF1058_RS17765 - Do family serine endopeptidase, at 339,693 to 341,216
_RS17765
HMPREF1058_RS17760: HMPREF1058_RS17760 - YkgB family protein, at 341,538 to 342,128
_RS17760
HMPREF1058_RS17755: HMPREF1058_RS17755 - helix-turn-helix domain-containing protein, at 342,221 to 343,057
_RS17755
Position (kb) 341
342
343 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 340.811 kb on + strand, within HMPREF1058_RS17765 at 340.811 kb on + strand, within HMPREF1058_RS17765 at 340.813 kb on + strand, within HMPREF1058_RS17765 at 340.813 kb on + strand, within HMPREF1058_RS17765 at 340.982 kb on + strand, within HMPREF1058_RS17765 at 340.983 kb on - strand, within HMPREF1058_RS17765 at 340.989 kb on + strand, within HMPREF1058_RS17765 at 341.097 kb on - strand at 341.132 kb on + strand at 341.155 kb on - strand at 341.201 kb on + strand at 341.222 kb on - strand at 341.277 kb on - strand at 341.286 kb on + strand at 341.440 kb on + strand at 341.444 kb on + strand at 341.448 kb on + strand at 341.448 kb on + strand at 341.448 kb on + strand at 341.449 kb on - strand at 341.449 kb on - strand at 341.493 kb on + strand at 341.494 kb on - strand at 341.494 kb on - strand at 341.505 kb on - strand at 341.738 kb on + strand, within HMPREF1058_RS17760 at 341.846 kb on + strand, within HMPREF1058_RS17760 at 341.847 kb on - strand, within HMPREF1058_RS17760 at 341.993 kb on - strand, within HMPREF1058_RS17760 at 342.091 kb on - strand at 342.142 kb on - strand at 342.210 kb on + strand at 342.210 kb on + strand at 342.211 kb on - strand at 342.352 kb on - strand, within HMPREF1058_RS17755 at 342.443 kb on - strand, within HMPREF1058_RS17755 at 342.466 kb on + strand, within HMPREF1058_RS17755 at 342.522 kb on + strand, within HMPREF1058_RS17755 at 342.625 kb on + strand, within HMPREF1058_RS17755 at 342.688 kb on + strand, within HMPREF1058_RS17755 at 342.801 kb on + strand, within HMPREF1058_RS17755 at 342.963 kb on + strand, within HMPREF1058_RS17755 at 343.019 kb on + strand at 343.021 kb on + strand at 343.039 kb on + strand at 343.043 kb on + strand at 343.043 kb on + strand at 343.043 kb on + strand at 343.043 kb on + strand at 343.043 kb on + strand at 343.044 kb on - strand at 343.119 kb on + strand at 343.120 kb on - strand at 343.125 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 340,811 + HMPREF1058_RS17765 0.73 -0.2 340,811 + HMPREF1058_RS17765 0.73 -1.9 340,813 + HMPREF1058_RS17765 0.73 +1.2 340,813 + HMPREF1058_RS17765 0.73 -0.3 340,982 + HMPREF1058_RS17765 0.85 -2.7 340,983 - HMPREF1058_RS17765 0.85 -1.0 340,989 + HMPREF1058_RS17765 0.85 -4.0 341,097 - -3.7 341,132 + -0.1 341,155 - +0.0 341,201 + -2.1 341,222 - +0.2 341,277 - -0.1 341,286 + +0.5 341,440 + -0.6 341,444 + -2.0 341,448 + +0.9 341,448 + +0.2 341,448 + +0.0 341,449 - -0.7 341,449 - -0.5 341,493 + +0.4 341,494 - -0.1 341,494 - -0.9 341,505 - +0.0 341,738 + HMPREF1058_RS17760 0.34 -2.6 341,846 + HMPREF1058_RS17760 0.52 -0.5 341,847 - HMPREF1058_RS17760 0.52 -1.3 341,993 - HMPREF1058_RS17760 0.77 -0.5 342,091 - +0.4 342,142 - -3.0 342,210 + +0.0 342,210 + +0.7 342,211 - +0.8 342,352 - HMPREF1058_RS17755 0.16 +0.5 342,443 - HMPREF1058_RS17755 0.27 -1.3 342,466 + HMPREF1058_RS17755 0.29 -3.0 342,522 + HMPREF1058_RS17755 0.36 -1.0 342,625 + HMPREF1058_RS17755 0.48 -1.9 342,688 + HMPREF1058_RS17755 0.56 -1.7 342,801 + HMPREF1058_RS17755 0.69 -0.6 342,963 + HMPREF1058_RS17755 0.89 +1.2 343,019 + -0.2 343,021 + +0.6 343,039 + -2.0 343,043 + +0.3 343,043 + -0.0 343,043 + -2.2 343,043 + -0.5 343,043 + -0.3 343,044 - -0.7 343,119 + +2.8 343,120 - -2.1 343,125 + +1.1
Or see this region's nucleotide sequence