Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17705 and HMPREF1058_RS17700 are separated by 15 nucleotides HMPREF1058_RS17700 and HMPREF1058_RS17695 are separated by 677 nucleotides
HMPREF1058_RS17705: HMPREF1058_RS17705 - J domain-containing protein, at 364,988 to 365,959
_RS17705
HMPREF1058_RS17700: HMPREF1058_RS17700 - chaperone modulator CbpM, at 365,975 to 366,262
_RS17700
HMPREF1058_RS17695: HMPREF1058_RS17695 - YihY/virulence factor BrkB family protein, at 366,940 to 368,259
_RS17695
Position (kb) 365
366
367 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 364.983 kb on + strand at 364.983 kb on - strand at 364.987 kb on + strand at 364.994 kb on + strand at 364.994 kb on + strand at 364.995 kb on - strand at 364.999 kb on - strand at 364.999 kb on - strand at 365.006 kb on + strand at 365.007 kb on - strand at 365.122 kb on + strand, within HMPREF1058_RS17705 at 365.123 kb on - strand, within HMPREF1058_RS17705 at 365.155 kb on - strand, within HMPREF1058_RS17705 at 365.243 kb on + strand, within HMPREF1058_RS17705 at 365.463 kb on - strand, within HMPREF1058_RS17705 at 365.464 kb on + strand, within HMPREF1058_RS17705 at 365.465 kb on - strand, within HMPREF1058_RS17705 at 365.541 kb on + strand, within HMPREF1058_RS17705 at 365.545 kb on + strand, within HMPREF1058_RS17705 at 365.639 kb on + strand, within HMPREF1058_RS17705 at 365.639 kb on + strand, within HMPREF1058_RS17705 at 365.639 kb on + strand, within HMPREF1058_RS17705 at 365.640 kb on - strand, within HMPREF1058_RS17705 at 365.640 kb on - strand, within HMPREF1058_RS17705 at 365.640 kb on - strand, within HMPREF1058_RS17705 at 365.694 kb on + strand, within HMPREF1058_RS17705 at 365.694 kb on + strand, within HMPREF1058_RS17705 at 365.694 kb on + strand, within HMPREF1058_RS17705 at 365.695 kb on - strand, within HMPREF1058_RS17705 at 365.695 kb on - strand, within HMPREF1058_RS17705 at 365.695 kb on - strand, within HMPREF1058_RS17705 at 365.696 kb on + strand, within HMPREF1058_RS17705 at 365.696 kb on + strand, within HMPREF1058_RS17705 at 365.696 kb on + strand, within HMPREF1058_RS17705 at 365.697 kb on - strand, within HMPREF1058_RS17705 at 365.698 kb on + strand, within HMPREF1058_RS17705 at 365.698 kb on + strand, within HMPREF1058_RS17705 at 365.773 kb on - strand, within HMPREF1058_RS17705 at 365.875 kb on - strand at 365.882 kb on + strand at 365.883 kb on - strand at 365.884 kb on + strand at 365.941 kb on - strand at 365.950 kb on + strand at 365.992 kb on + strand at 365.995 kb on + strand at 366.141 kb on + strand, within HMPREF1058_RS17700 at 366.141 kb on + strand, within HMPREF1058_RS17700 at 366.163 kb on + strand, within HMPREF1058_RS17700 at 366.205 kb on - strand, within HMPREF1058_RS17700 at 366.357 kb on + strand at 366.359 kb on + strand at 366.411 kb on - strand at 366.412 kb on + strand at 366.413 kb on - strand at 366.413 kb on - strand at 366.413 kb on - strand at 366.502 kb on + strand at 366.912 kb on - strand at 366.912 kb on - strand at 366.914 kb on - strand at 366.914 kb on - strand at 366.987 kb on + strand at 367.031 kb on + strand at 367.032 kb on - strand at 367.036 kb on + strand at 367.036 kb on + strand at 367.037 kb on - strand at 367.038 kb on + strand at 367.089 kb on + strand, within HMPREF1058_RS17695 at 367.117 kb on + strand, within HMPREF1058_RS17695 at 367.118 kb on - strand, within HMPREF1058_RS17695 at 367.118 kb on - strand, within HMPREF1058_RS17695 at 367.157 kb on + strand, within HMPREF1058_RS17695
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 364,983 + -1.9 364,983 - -0.0 364,987 + -0.5 364,994 + -0.2 364,994 + +2.3 364,995 - +1.3 364,999 - +2.6 364,999 - -3.2 365,006 + -0.3 365,007 - -2.5 365,122 + HMPREF1058_RS17705 0.14 -1.5 365,123 - HMPREF1058_RS17705 0.14 -3.9 365,155 - HMPREF1058_RS17705 0.17 -0.7 365,243 + HMPREF1058_RS17705 0.26 -2.5 365,463 - HMPREF1058_RS17705 0.49 -0.3 365,464 + HMPREF1058_RS17705 0.49 -0.2 365,465 - HMPREF1058_RS17705 0.49 -0.1 365,541 + HMPREF1058_RS17705 0.57 -0.9 365,545 + HMPREF1058_RS17705 0.57 -1.6 365,639 + HMPREF1058_RS17705 0.67 -1.2 365,639 + HMPREF1058_RS17705 0.67 +0.8 365,639 + HMPREF1058_RS17705 0.67 -0.7 365,640 - HMPREF1058_RS17705 0.67 -2.4 365,640 - HMPREF1058_RS17705 0.67 -1.9 365,640 - HMPREF1058_RS17705 0.67 -0.7 365,694 + HMPREF1058_RS17705 0.73 -1.2 365,694 + HMPREF1058_RS17705 0.73 +1.0 365,694 + HMPREF1058_RS17705 0.73 +1.5 365,695 - HMPREF1058_RS17705 0.73 -1.4 365,695 - HMPREF1058_RS17705 0.73 -0.2 365,695 - HMPREF1058_RS17705 0.73 +2.8 365,696 + HMPREF1058_RS17705 0.73 +0.0 365,696 + HMPREF1058_RS17705 0.73 -1.8 365,696 + HMPREF1058_RS17705 0.73 +0.5 365,697 - HMPREF1058_RS17705 0.73 -2.0 365,698 + HMPREF1058_RS17705 0.73 +1.0 365,698 + HMPREF1058_RS17705 0.73 -0.5 365,773 - HMPREF1058_RS17705 0.81 -0.5 365,875 - -0.5 365,882 + +1.4 365,883 - +1.0 365,884 + +0.2 365,941 - -1.1 365,950 + -0.3 365,992 + +1.0 365,995 + -1.0 366,141 + HMPREF1058_RS17700 0.58 -1.4 366,141 + HMPREF1058_RS17700 0.58 -1.6 366,163 + HMPREF1058_RS17700 0.65 -1.6 366,205 - HMPREF1058_RS17700 0.80 -1.5 366,357 + -2.1 366,359 + +0.3 366,411 - -0.7 366,412 + +2.8 366,413 - -0.7 366,413 - +4.2 366,413 - -1.0 366,502 + -1.5 366,912 - -1.9 366,912 - -0.4 366,914 - -1.7 366,914 - -1.3 366,987 + +0.7 367,031 + +1.7 367,032 - -2.2 367,036 + +1.0 367,036 + -2.6 367,037 - -2.2 367,038 + -1.8 367,089 + HMPREF1058_RS17695 0.11 +0.1 367,117 + HMPREF1058_RS17695 0.13 +0.0 367,118 - HMPREF1058_RS17695 0.13 +0.7 367,118 - HMPREF1058_RS17695 0.13 -1.2 367,157 + HMPREF1058_RS17695 0.16 -1.2
Or see this region's nucleotide sequence