Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17440 and HMPREF1058_RS17435 are separated by 3 nucleotides HMPREF1058_RS17435 and HMPREF1058_RS17430 are separated by 6 nucleotides
HMPREF1058_RS17440: HMPREF1058_RS17440 - DUF3868 domain-containing protein, at 443,271 to 444,365
_RS17440
HMPREF1058_RS17435: HMPREF1058_RS17435 - DUF3575 domain-containing protein, at 444,369 to 444,941
_RS17435
HMPREF1058_RS17430: HMPREF1058_RS17430 - DUF3868 domain-containing protein, at 444,948 to 446,357
_RS17430
Position (kb) 444
445 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 443.576 kb on - strand, within HMPREF1058_RS17440 at 443.576 kb on - strand, within HMPREF1058_RS17440 at 443.588 kb on + strand, within HMPREF1058_RS17440 at 443.758 kb on + strand, within HMPREF1058_RS17440 at 443.759 kb on - strand, within HMPREF1058_RS17440 at 443.759 kb on - strand, within HMPREF1058_RS17440 at 443.814 kb on - strand, within HMPREF1058_RS17440 at 443.913 kb on + strand, within HMPREF1058_RS17440 at 443.914 kb on - strand, within HMPREF1058_RS17440 at 443.917 kb on + strand, within HMPREF1058_RS17440 at 443.917 kb on + strand, within HMPREF1058_RS17440 at 444.033 kb on + strand at 444.104 kb on - strand, within HMPREF1058_RS17440 at 444.237 kb on + strand, within HMPREF1058_RS17440 at 444.261 kb on + strand at 444.319 kb on - strand at 444.359 kb on - strand at 444.363 kb on + strand at 444.364 kb on - strand at 444.752 kb on - strand, within HMPREF1058_RS17435 at 444.812 kb on - strand, within HMPREF1058_RS17435 at 444.822 kb on + strand, within HMPREF1058_RS17435 at 444.823 kb on - strand, within HMPREF1058_RS17435 at 444.825 kb on - strand, within HMPREF1058_RS17435 at 444.825 kb on - strand, within HMPREF1058_RS17435 at 444.841 kb on - strand, within HMPREF1058_RS17435 at 444.928 kb on - strand at 444.928 kb on - strand at 444.955 kb on - strand at 444.963 kb on + strand at 444.963 kb on + strand at 444.964 kb on - strand at 444.968 kb on + strand at 444.968 kb on + strand at 445.076 kb on - strand at 445.129 kb on + strand, within HMPREF1058_RS17430 at 445.156 kb on + strand, within HMPREF1058_RS17430 at 445.185 kb on + strand, within HMPREF1058_RS17430 at 445.209 kb on - strand, within HMPREF1058_RS17430 at 445.288 kb on + strand, within HMPREF1058_RS17430 at 445.395 kb on + strand, within HMPREF1058_RS17430 at 445.498 kb on - strand, within HMPREF1058_RS17430 at 445.570 kb on + strand, within HMPREF1058_RS17430 at 445.610 kb on - strand, within HMPREF1058_RS17430 at 445.610 kb on - strand, within HMPREF1058_RS17430 at 445.711 kb on - strand, within HMPREF1058_RS17430 at 445.714 kb on + strand, within HMPREF1058_RS17430 at 445.715 kb on - strand, within HMPREF1058_RS17430 at 445.725 kb on + strand, within HMPREF1058_RS17430 at 445.740 kb on - strand, within HMPREF1058_RS17430
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 443,576 - HMPREF1058_RS17440 0.28 +2.4 443,576 - HMPREF1058_RS17440 0.28 +0.1 443,588 + HMPREF1058_RS17440 0.29 -0.1 443,758 + HMPREF1058_RS17440 0.44 -3.3 443,759 - HMPREF1058_RS17440 0.45 -0.4 443,759 - HMPREF1058_RS17440 0.45 -0.6 443,814 - HMPREF1058_RS17440 0.50 +0.4 443,913 + HMPREF1058_RS17440 0.59 -0.1 443,914 - HMPREF1058_RS17440 0.59 -0.4 443,917 + HMPREF1058_RS17440 0.59 +1.5 443,917 + HMPREF1058_RS17440 0.59 -1.8 444,033 + -0.3 444,104 - HMPREF1058_RS17440 0.76 -1.7 444,237 + HMPREF1058_RS17440 0.88 -2.2 444,261 + -1.7 444,319 - -0.8 444,359 - -0.2 444,363 + -1.8 444,364 - -3.8 444,752 - HMPREF1058_RS17435 0.67 -0.8 444,812 - HMPREF1058_RS17435 0.77 -0.2 444,822 + HMPREF1058_RS17435 0.79 -1.9 444,823 - HMPREF1058_RS17435 0.79 -2.2 444,825 - HMPREF1058_RS17435 0.80 -0.6 444,825 - HMPREF1058_RS17435 0.80 +0.2 444,841 - HMPREF1058_RS17435 0.82 +0.2 444,928 - -2.2 444,928 - -0.8 444,955 - +0.7 444,963 + +1.0 444,963 + -0.5 444,964 - -2.0 444,968 + +1.1 444,968 + -1.0 445,076 - +1.2 445,129 + HMPREF1058_RS17430 0.13 -1.6 445,156 + HMPREF1058_RS17430 0.15 +0.7 445,185 + HMPREF1058_RS17430 0.17 +0.3 445,209 - HMPREF1058_RS17430 0.19 +0.7 445,288 + HMPREF1058_RS17430 0.24 -0.6 445,395 + HMPREF1058_RS17430 0.32 +0.1 445,498 - HMPREF1058_RS17430 0.39 +0.8 445,570 + HMPREF1058_RS17430 0.44 -0.8 445,610 - HMPREF1058_RS17430 0.47 +2.2 445,610 - HMPREF1058_RS17430 0.47 +1.0 445,711 - HMPREF1058_RS17430 0.54 +1.6 445,714 + HMPREF1058_RS17430 0.54 -2.0 445,715 - HMPREF1058_RS17430 0.54 -0.6 445,725 + HMPREF1058_RS17430 0.55 +0.5 445,740 - HMPREF1058_RS17430 0.56 +1.1
Or see this region's nucleotide sequence