Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS17375 and HMPREF1058_RS17370 are separated by 277 nucleotides HMPREF1058_RS17370 and HMPREF1058_RS17365 are separated by 67 nucleotides HMPREF1058_RS17365 and HMPREF1058_RS17360 are separated by 527 nucleotides
HMPREF1058_RS17375: HMPREF1058_RS17375 - hypothetical protein, at 459,186 to 459,383
_RS17375
HMPREF1058_RS17370: HMPREF1058_RS17370 - UpxY family transcription antiterminator, at 459,661 to 460,161
_RS17370
HMPREF1058_RS17365: HMPREF1058_RS17365 - nucleotidyltransferase domain-containing protein, at 460,229 to 460,519
_RS17365
HMPREF1058_RS17360: HMPREF1058_RS17360 - hypothetical protein, at 461,047 to 462,564
_RS17360
Position (kb) 460
461 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 459.466 kb on - strand at 459.682 kb on + strand at 459.683 kb on - strand at 459.756 kb on - strand, within HMPREF1058_RS17370 at 459.836 kb on + strand, within HMPREF1058_RS17370 at 459.837 kb on - strand, within HMPREF1058_RS17370 at 459.887 kb on - strand, within HMPREF1058_RS17370 at 460.095 kb on - strand, within HMPREF1058_RS17370 at 460.160 kb on - strand at 460.160 kb on - strand at 460.270 kb on - strand, within HMPREF1058_RS17365 at 460.303 kb on - strand, within HMPREF1058_RS17365 at 460.303 kb on - strand at 460.390 kb on - strand, within HMPREF1058_RS17365 at 460.483 kb on - strand, within HMPREF1058_RS17365 at 460.542 kb on + strand at 460.542 kb on + strand at 460.633 kb on + strand at 460.640 kb on + strand at 460.670 kb on + strand at 460.670 kb on + strand at 460.671 kb on - strand at 460.742 kb on - strand at 460.748 kb on + strand at 460.748 kb on + strand at 460.749 kb on - strand at 460.752 kb on - strand at 460.814 kb on + strand at 460.814 kb on + strand at 460.814 kb on + strand at 460.831 kb on + strand at 460.831 kb on + strand at 460.904 kb on - strand at 460.941 kb on - strand at 460.994 kb on + strand at 460.994 kb on + strand at 460.999 kb on - strand at 461.002 kb on - strand at 461.102 kb on + strand at 461.102 kb on + strand at 461.107 kb on - strand at 461.116 kb on - strand at 461.127 kb on - strand at 461.186 kb on - strand at 461.202 kb on + strand, within HMPREF1058_RS17360 at 461.203 kb on - strand, within HMPREF1058_RS17360 at 461.203 kb on - strand, within HMPREF1058_RS17360 at 461.249 kb on + strand, within HMPREF1058_RS17360 at 461.304 kb on - strand, within HMPREF1058_RS17360 at 461.318 kb on + strand, within HMPREF1058_RS17360 at 461.328 kb on - strand, within HMPREF1058_RS17360 at 461.328 kb on - strand, within HMPREF1058_RS17360 at 461.349 kb on - strand, within HMPREF1058_RS17360 at 461.349 kb on - strand, within HMPREF1058_RS17360 at 461.353 kb on - strand, within HMPREF1058_RS17360 at 461.353 kb on - strand at 461.353 kb on - strand, within HMPREF1058_RS17360 at 461.376 kb on - strand, within HMPREF1058_RS17360 at 461.385 kb on - strand, within HMPREF1058_RS17360 at 461.396 kb on + strand, within HMPREF1058_RS17360 at 461.397 kb on - strand, within HMPREF1058_RS17360 at 461.402 kb on + strand, within HMPREF1058_RS17360 at 461.445 kb on - strand, within HMPREF1058_RS17360 at 461.463 kb on - strand, within HMPREF1058_RS17360 at 461.473 kb on - strand, within HMPREF1058_RS17360 at 461.474 kb on + strand, within HMPREF1058_RS17360
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 459,466 - -2.0 459,682 + +0.3 459,683 - +2.0 459,756 - HMPREF1058_RS17370 0.19 +1.0 459,836 + HMPREF1058_RS17370 0.35 -0.4 459,837 - HMPREF1058_RS17370 0.35 -0.6 459,887 - HMPREF1058_RS17370 0.45 +3.1 460,095 - HMPREF1058_RS17370 0.87 +0.3 460,160 - +1.1 460,160 - -2.7 460,270 - HMPREF1058_RS17365 0.14 -1.2 460,303 - HMPREF1058_RS17365 0.25 -1.7 460,303 - +0.5 460,390 - HMPREF1058_RS17365 0.55 +0.2 460,483 - HMPREF1058_RS17365 0.87 -1.4 460,542 + -0.0 460,542 + +0.3 460,633 + +0.0 460,640 + -0.8 460,670 + -0.9 460,670 + +0.6 460,671 - +0.5 460,742 - -1.9 460,748 + -1.2 460,748 + -0.9 460,749 - +1.2 460,752 - +2.5 460,814 + -1.0 460,814 + +2.0 460,814 + +0.8 460,831 + +1.7 460,831 + +1.4 460,904 - +1.2 460,941 - -0.0 460,994 + -0.4 460,994 + +0.6 460,999 - +1.2 461,002 - +0.6 461,102 + -1.6 461,102 + +0.2 461,107 - +0.4 461,116 - -3.3 461,127 - +0.8 461,186 - -1.0 461,202 + HMPREF1058_RS17360 0.10 -0.4 461,203 - HMPREF1058_RS17360 0.10 +0.6 461,203 - HMPREF1058_RS17360 0.10 -1.8 461,249 + HMPREF1058_RS17360 0.13 -0.8 461,304 - HMPREF1058_RS17360 0.17 +0.8 461,318 + HMPREF1058_RS17360 0.18 +0.8 461,328 - HMPREF1058_RS17360 0.19 -1.2 461,328 - HMPREF1058_RS17360 0.19 +0.4 461,349 - HMPREF1058_RS17360 0.20 -1.0 461,349 - HMPREF1058_RS17360 0.20 +0.7 461,353 - HMPREF1058_RS17360 0.20 +0.1 461,353 - +1.8 461,353 - HMPREF1058_RS17360 0.20 +0.1 461,376 - HMPREF1058_RS17360 0.22 -3.6 461,385 - HMPREF1058_RS17360 0.22 +0.5 461,396 + HMPREF1058_RS17360 0.23 +0.3 461,397 - HMPREF1058_RS17360 0.23 +0.1 461,402 + HMPREF1058_RS17360 0.23 -1.0 461,445 - HMPREF1058_RS17360 0.26 +0.2 461,463 - HMPREF1058_RS17360 0.27 +0.2 461,473 - HMPREF1058_RS17360 0.28 +0.9 461,474 + HMPREF1058_RS17360 0.28 -0.4
Or see this region's nucleotide sequence