Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16835 and HMPREF1058_RS16830 are separated by 34 nucleotides HMPREF1058_RS16830 and HMPREF1058_RS16825 overlap by 1 nucleotides HMPREF1058_RS16825 and HMPREF1058_RS16820 are separated by 10 nucleotides
HMPREF1058_RS16835: HMPREF1058_RS16835 - ketol-acid reductoisomerase, at 584,108 to 585,151
_RS16835
HMPREF1058_RS16830: HMPREF1058_RS16830 - acyl-ACP thioesterase, at 585,186 to 585,929
_RS16830
HMPREF1058_RS16825: HMPREF1058_RS16825 - acetolactate synthase small subunit, at 585,929 to 586,483
_RS16825
HMPREF1058_RS16820: HMPREF1058_RS16820 - biosynthetic-type acetolactate synthase large subunit, at 586,494 to 588,191
_RS16820
Position (kb) 585
586
587 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 584.984 kb on + strand, within HMPREF1058_RS16835 at 584.985 kb on - strand, within HMPREF1058_RS16835 at 585.187 kb on + strand at 585.196 kb on - strand at 585.244 kb on - strand at 585.246 kb on - strand at 585.250 kb on + strand at 585.250 kb on + strand at 585.291 kb on - strand, within HMPREF1058_RS16830 at 585.298 kb on + strand, within HMPREF1058_RS16830 at 585.299 kb on - strand, within HMPREF1058_RS16830 at 585.302 kb on - strand, within HMPREF1058_RS16830 at 585.313 kb on - strand, within HMPREF1058_RS16830 at 585.316 kb on + strand, within HMPREF1058_RS16830 at 585.362 kb on + strand, within HMPREF1058_RS16830 at 585.387 kb on + strand, within HMPREF1058_RS16830 at 585.387 kb on + strand, within HMPREF1058_RS16830 at 585.388 kb on - strand, within HMPREF1058_RS16830 at 585.388 kb on - strand, within HMPREF1058_RS16830 at 585.389 kb on + strand, within HMPREF1058_RS16830 at 585.390 kb on - strand, within HMPREF1058_RS16830 at 585.392 kb on - strand, within HMPREF1058_RS16830 at 585.396 kb on - strand, within HMPREF1058_RS16830 at 585.396 kb on - strand, within HMPREF1058_RS16830 at 585.399 kb on - strand, within HMPREF1058_RS16830 at 585.399 kb on - strand, within HMPREF1058_RS16830 at 585.480 kb on - strand, within HMPREF1058_RS16830 at 585.496 kb on - strand, within HMPREF1058_RS16830 at 585.497 kb on + strand, within HMPREF1058_RS16830 at 585.516 kb on + strand, within HMPREF1058_RS16830 at 585.520 kb on + strand, within HMPREF1058_RS16830 at 585.521 kb on - strand, within HMPREF1058_RS16830 at 585.521 kb on - strand, within HMPREF1058_RS16830 at 585.521 kb on - strand, within HMPREF1058_RS16830 at 585.531 kb on - strand, within HMPREF1058_RS16830 at 585.533 kb on + strand, within HMPREF1058_RS16830 at 585.657 kb on - strand, within HMPREF1058_RS16830 at 585.707 kb on - strand, within HMPREF1058_RS16830 at 585.719 kb on + strand, within HMPREF1058_RS16830 at 585.720 kb on - strand, within HMPREF1058_RS16830 at 585.732 kb on + strand, within HMPREF1058_RS16830 at 585.758 kb on + strand, within HMPREF1058_RS16830 at 585.759 kb on - strand, within HMPREF1058_RS16830 at 585.780 kb on - strand, within HMPREF1058_RS16830 at 585.901 kb on + strand at 586.003 kb on + strand, within HMPREF1058_RS16825 at 586.004 kb on - strand, within HMPREF1058_RS16825 at 586.079 kb on - strand, within HMPREF1058_RS16825 at 586.133 kb on + strand, within HMPREF1058_RS16825 at 586.148 kb on - strand, within HMPREF1058_RS16825 at 586.210 kb on - strand, within HMPREF1058_RS16825 at 586.230 kb on + strand, within HMPREF1058_RS16825 at 586.252 kb on - strand, within HMPREF1058_RS16825 at 586.252 kb on - strand, within HMPREF1058_RS16825 at 586.331 kb on - strand, within HMPREF1058_RS16825 at 586.333 kb on + strand, within HMPREF1058_RS16825 at 586.334 kb on - strand, within HMPREF1058_RS16825 at 586.334 kb on - strand, within HMPREF1058_RS16825 at 586.334 kb on - strand, within HMPREF1058_RS16825 at 586.337 kb on - strand, within HMPREF1058_RS16825 at 586.339 kb on - strand, within HMPREF1058_RS16825 at 586.442 kb on - strand at 586.466 kb on - strand at 586.466 kb on - strand at 586.467 kb on + strand at 586.469 kb on + strand at 586.469 kb on + strand at 586.470 kb on - strand at 586.483 kb on + strand at 586.491 kb on - strand at 586.495 kb on + strand at 586.687 kb on + strand, within HMPREF1058_RS16820 at 586.736 kb on + strand, within HMPREF1058_RS16820 at 586.864 kb on - strand, within HMPREF1058_RS16820 at 586.869 kb on + strand, within HMPREF1058_RS16820 at 586.895 kb on + strand, within HMPREF1058_RS16820 at 586.905 kb on - strand, within HMPREF1058_RS16820 at 586.951 kb on - strand, within HMPREF1058_RS16820 at 586.967 kb on + strand, within HMPREF1058_RS16820 at 586.967 kb on + strand, within HMPREF1058_RS16820 at 586.968 kb on - strand, within HMPREF1058_RS16820 at 587.125 kb on + strand, within HMPREF1058_RS16820 at 587.153 kb on + strand, within HMPREF1058_RS16820 at 587.174 kb on + strand, within HMPREF1058_RS16820 at 587.175 kb on - strand, within HMPREF1058_RS16820 at 587.202 kb on - strand, within HMPREF1058_RS16820 at 587.206 kb on - strand, within HMPREF1058_RS16820 at 587.211 kb on - strand, within HMPREF1058_RS16820 at 587.226 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.308 kb on + strand, within HMPREF1058_RS16820 at 587.309 kb on + strand, within HMPREF1058_RS16820 at 587.309 kb on - strand, within HMPREF1058_RS16820 at 587.309 kb on - strand, within HMPREF1058_RS16820 at 587.309 kb on - strand, within HMPREF1058_RS16820 at 587.348 kb on + strand, within HMPREF1058_RS16820 at 587.411 kb on + strand, within HMPREF1058_RS16820 at 587.412 kb on - strand, within HMPREF1058_RS16820 at 587.431 kb on - strand, within HMPREF1058_RS16820
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 584,984 + HMPREF1058_RS16835 0.84 -1.6 584,985 - HMPREF1058_RS16835 0.84 -2.8 585,187 + -2.7 585,196 - -0.1 585,244 - -3.4 585,246 - -1.0 585,250 + -1.4 585,250 + +1.1 585,291 - HMPREF1058_RS16830 0.14 +1.3 585,298 + HMPREF1058_RS16830 0.15 -1.2 585,299 - HMPREF1058_RS16830 0.15 +1.5 585,302 - HMPREF1058_RS16830 0.16 +2.0 585,313 - HMPREF1058_RS16830 0.17 +1.3 585,316 + HMPREF1058_RS16830 0.17 -0.8 585,362 + HMPREF1058_RS16830 0.24 +0.4 585,387 + HMPREF1058_RS16830 0.27 +1.2 585,387 + HMPREF1058_RS16830 0.27 -0.2 585,388 - HMPREF1058_RS16830 0.27 -0.7 585,388 - HMPREF1058_RS16830 0.27 +0.2 585,389 + HMPREF1058_RS16830 0.27 -3.4 585,390 - HMPREF1058_RS16830 0.27 +1.5 585,392 - HMPREF1058_RS16830 0.28 +1.8 585,396 - HMPREF1058_RS16830 0.28 +1.8 585,396 - HMPREF1058_RS16830 0.28 +1.1 585,399 - HMPREF1058_RS16830 0.29 -2.7 585,399 - HMPREF1058_RS16830 0.29 +1.7 585,480 - HMPREF1058_RS16830 0.40 -2.8 585,496 - HMPREF1058_RS16830 0.42 +0.8 585,497 + HMPREF1058_RS16830 0.42 -1.4 585,516 + HMPREF1058_RS16830 0.44 -2.1 585,520 + HMPREF1058_RS16830 0.45 -0.5 585,521 - HMPREF1058_RS16830 0.45 +0.5 585,521 - HMPREF1058_RS16830 0.45 +1.3 585,521 - HMPREF1058_RS16830 0.45 -0.7 585,531 - HMPREF1058_RS16830 0.46 +2.0 585,533 + HMPREF1058_RS16830 0.47 -0.9 585,657 - HMPREF1058_RS16830 0.63 -2.7 585,707 - HMPREF1058_RS16830 0.70 -0.2 585,719 + HMPREF1058_RS16830 0.72 +0.3 585,720 - HMPREF1058_RS16830 0.72 +0.5 585,732 + HMPREF1058_RS16830 0.73 -3.2 585,758 + HMPREF1058_RS16830 0.77 -0.5 585,759 - HMPREF1058_RS16830 0.77 +2.9 585,780 - HMPREF1058_RS16830 0.80 -1.2 585,901 + +1.1 586,003 + HMPREF1058_RS16825 0.13 -0.7 586,004 - HMPREF1058_RS16825 0.14 -2.0 586,079 - HMPREF1058_RS16825 0.27 -1.9 586,133 + HMPREF1058_RS16825 0.37 -1.2 586,148 - HMPREF1058_RS16825 0.39 -0.6 586,210 - HMPREF1058_RS16825 0.51 -1.5 586,230 + HMPREF1058_RS16825 0.54 -0.8 586,252 - HMPREF1058_RS16825 0.58 -1.7 586,252 - HMPREF1058_RS16825 0.58 -1.2 586,331 - HMPREF1058_RS16825 0.72 -2.0 586,333 + HMPREF1058_RS16825 0.73 -0.2 586,334 - HMPREF1058_RS16825 0.73 -0.5 586,334 - HMPREF1058_RS16825 0.73 -1.4 586,334 - HMPREF1058_RS16825 0.73 -1.5 586,337 - HMPREF1058_RS16825 0.74 -1.6 586,339 - HMPREF1058_RS16825 0.74 -2.5 586,442 - +2.0 586,466 - -2.1 586,466 - -2.5 586,467 + -1.6 586,469 + -0.2 586,469 + -2.2 586,470 - -2.5 586,483 + -2.8 586,491 - +3.3 586,495 + +0.5 586,687 + HMPREF1058_RS16820 0.11 -1.3 586,736 + HMPREF1058_RS16820 0.14 -0.4 586,864 - HMPREF1058_RS16820 0.22 -2.4 586,869 + HMPREF1058_RS16820 0.22 -0.7 586,895 + HMPREF1058_RS16820 0.24 -0.7 586,905 - HMPREF1058_RS16820 0.24 -0.1 586,951 - HMPREF1058_RS16820 0.27 -1.2 586,967 + HMPREF1058_RS16820 0.28 +0.4 586,967 + HMPREF1058_RS16820 0.28 +0.8 586,968 - HMPREF1058_RS16820 0.28 -0.5 587,125 + HMPREF1058_RS16820 0.37 -1.8 587,153 + HMPREF1058_RS16820 0.39 -3.6 587,174 + HMPREF1058_RS16820 0.40 -2.2 587,175 - HMPREF1058_RS16820 0.40 -0.7 587,202 - HMPREF1058_RS16820 0.42 -2.9 587,206 - HMPREF1058_RS16820 0.42 -1.8 587,211 - HMPREF1058_RS16820 0.42 -2.2 587,226 + HMPREF1058_RS16820 0.43 -1.7 587,308 + HMPREF1058_RS16820 0.48 -3.0 587,308 + HMPREF1058_RS16820 0.48 -1.4 587,308 + HMPREF1058_RS16820 0.48 -0.7 587,308 + HMPREF1058_RS16820 0.48 +2.2 587,308 + HMPREF1058_RS16820 0.48 -1.4 587,309 + HMPREF1058_RS16820 0.48 -1.2 587,309 - HMPREF1058_RS16820 0.48 -0.6 587,309 - HMPREF1058_RS16820 0.48 -1.8 587,309 - HMPREF1058_RS16820 0.48 -0.6 587,348 + HMPREF1058_RS16820 0.50 +0.6 587,411 + HMPREF1058_RS16820 0.54 -2.5 587,412 - HMPREF1058_RS16820 0.54 -0.2 587,431 - HMPREF1058_RS16820 0.55 -1.3
Or see this region's nucleotide sequence