Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16695 and HMPREF1058_RS16690 overlap by 4 nucleotides HMPREF1058_RS16690 and HMPREF1058_RS16685 are separated by 194 nucleotides
HMPREF1058_RS16695: HMPREF1058_RS16695 - phosphotransferase, at 614,640 to 616,070
_RS16695
HMPREF1058_RS16690: HMPREF1058_RS16690 - NTP transferase domain-containing protein, at 616,067 to 616,912
_RS16690
HMPREF1058_RS16685: HMPREF1058_RS16685 - methionine synthase, at 617,107 to 619,860
_RS16685
Position (kb) 616
617 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 615.184 kb on + strand, within HMPREF1058_RS16695 at 615.290 kb on + strand, within HMPREF1058_RS16695 at 615.290 kb on + strand, within HMPREF1058_RS16695 at 615.313 kb on + strand, within HMPREF1058_RS16695 at 615.342 kb on - strand, within HMPREF1058_RS16695 at 615.381 kb on + strand, within HMPREF1058_RS16695 at 615.382 kb on - strand, within HMPREF1058_RS16695 at 615.382 kb on - strand, within HMPREF1058_RS16695 at 615.412 kb on + strand, within HMPREF1058_RS16695 at 615.423 kb on + strand, within HMPREF1058_RS16695 at 615.499 kb on - strand, within HMPREF1058_RS16695 at 615.591 kb on + strand, within HMPREF1058_RS16695 at 615.607 kb on + strand, within HMPREF1058_RS16695 at 615.732 kb on + strand, within HMPREF1058_RS16695 at 615.733 kb on - strand, within HMPREF1058_RS16695 at 615.733 kb on - strand, within HMPREF1058_RS16695 at 615.841 kb on + strand, within HMPREF1058_RS16695 at 615.989 kb on + strand at 616.024 kb on + strand at 616.042 kb on + strand at 616.042 kb on + strand at 616.043 kb on - strand at 616.043 kb on - strand at 616.109 kb on - strand at 616.212 kb on + strand, within HMPREF1058_RS16690 at 616.212 kb on + strand, within HMPREF1058_RS16690 at 616.354 kb on - strand, within HMPREF1058_RS16690 at 616.372 kb on + strand, within HMPREF1058_RS16690 at 616.373 kb on - strand, within HMPREF1058_RS16690 at 616.487 kb on + strand, within HMPREF1058_RS16690 at 616.487 kb on + strand, within HMPREF1058_RS16690 at 616.503 kb on + strand, within HMPREF1058_RS16690 at 616.504 kb on - strand, within HMPREF1058_RS16690 at 616.504 kb on - strand, within HMPREF1058_RS16690 at 616.544 kb on + strand, within HMPREF1058_RS16690 at 616.556 kb on - strand, within HMPREF1058_RS16690 at 616.619 kb on - strand, within HMPREF1058_RS16690 at 616.635 kb on + strand, within HMPREF1058_RS16690 at 616.690 kb on + strand, within HMPREF1058_RS16690 at 616.712 kb on + strand, within HMPREF1058_RS16690 at 616.712 kb on + strand, within HMPREF1058_RS16690 at 616.776 kb on - strand, within HMPREF1058_RS16690 at 616.829 kb on + strand at 616.829 kb on + strand at 616.928 kb on + strand at 616.928 kb on + strand at 616.962 kb on - strand at 617.057 kb on - strand at 617.086 kb on - strand at 617.198 kb on + strand at 617.320 kb on + strand at 617.335 kb on - strand at 617.335 kb on - strand at 617.338 kb on + strand at 617.339 kb on - strand at 617.459 kb on - strand, within HMPREF1058_RS16685 at 617.461 kb on - strand, within HMPREF1058_RS16685 at 617.479 kb on - strand, within HMPREF1058_RS16685 at 617.492 kb on - strand, within HMPREF1058_RS16685 at 617.525 kb on - strand, within HMPREF1058_RS16685 at 617.525 kb on - strand, within HMPREF1058_RS16685 at 617.527 kb on - strand, within HMPREF1058_RS16685 at 617.527 kb on - strand, within HMPREF1058_RS16685 at 617.535 kb on - strand, within HMPREF1058_RS16685 at 617.612 kb on - strand, within HMPREF1058_RS16685 at 617.760 kb on + strand, within HMPREF1058_RS16685 at 617.761 kb on - strand, within HMPREF1058_RS16685 at 617.761 kb on - strand, within HMPREF1058_RS16685 at 617.804 kb on + strand, within HMPREF1058_RS16685 at 617.857 kb on + strand, within HMPREF1058_RS16685
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 615,184 + HMPREF1058_RS16695 0.38 -1.2 615,290 + HMPREF1058_RS16695 0.45 +2.9 615,290 + HMPREF1058_RS16695 0.45 -0.7 615,313 + HMPREF1058_RS16695 0.47 +0.4 615,342 - HMPREF1058_RS16695 0.49 +0.4 615,381 + HMPREF1058_RS16695 0.52 -0.8 615,382 - HMPREF1058_RS16695 0.52 -1.0 615,382 - HMPREF1058_RS16695 0.52 +1.2 615,412 + HMPREF1058_RS16695 0.54 -2.1 615,423 + HMPREF1058_RS16695 0.55 +1.2 615,499 - HMPREF1058_RS16695 0.60 +0.7 615,591 + HMPREF1058_RS16695 0.66 +0.4 615,607 + HMPREF1058_RS16695 0.68 +0.2 615,732 + HMPREF1058_RS16695 0.76 +1.1 615,733 - HMPREF1058_RS16695 0.76 +1.7 615,733 - HMPREF1058_RS16695 0.76 -0.9 615,841 + HMPREF1058_RS16695 0.84 -0.8 615,989 + +0.9 616,024 + -1.7 616,042 + +0.2 616,042 + +1.3 616,043 - -1.3 616,043 - -0.4 616,109 - +0.6 616,212 + HMPREF1058_RS16690 0.17 -0.0 616,212 + HMPREF1058_RS16690 0.17 -1.8 616,354 - HMPREF1058_RS16690 0.34 -0.5 616,372 + HMPREF1058_RS16690 0.36 -0.4 616,373 - HMPREF1058_RS16690 0.36 -0.6 616,487 + HMPREF1058_RS16690 0.50 +0.4 616,487 + HMPREF1058_RS16690 0.50 -1.0 616,503 + HMPREF1058_RS16690 0.52 -0.6 616,504 - HMPREF1058_RS16690 0.52 -2.6 616,504 - HMPREF1058_RS16690 0.52 -1.1 616,544 + HMPREF1058_RS16690 0.56 -0.5 616,556 - HMPREF1058_RS16690 0.58 -1.6 616,619 - HMPREF1058_RS16690 0.65 -0.5 616,635 + HMPREF1058_RS16690 0.67 -2.8 616,690 + HMPREF1058_RS16690 0.74 -0.6 616,712 + HMPREF1058_RS16690 0.76 -1.1 616,712 + HMPREF1058_RS16690 0.76 -1.0 616,776 - HMPREF1058_RS16690 0.84 -1.2 616,829 + -0.7 616,829 + -0.3 616,928 + +0.0 616,928 + +2.7 616,962 - -1.0 617,057 - +1.0 617,086 - +0.8 617,198 + +0.0 617,320 + +2.3 617,335 - +1.4 617,335 - +0.4 617,338 + +0.3 617,339 - +0.5 617,459 - HMPREF1058_RS16685 0.13 -0.8 617,461 - HMPREF1058_RS16685 0.13 +1.1 617,479 - HMPREF1058_RS16685 0.14 +1.5 617,492 - HMPREF1058_RS16685 0.14 -0.5 617,525 - HMPREF1058_RS16685 0.15 +0.7 617,525 - HMPREF1058_RS16685 0.15 +1.9 617,527 - HMPREF1058_RS16685 0.15 +1.0 617,527 - HMPREF1058_RS16685 0.15 +0.8 617,535 - HMPREF1058_RS16685 0.16 -0.4 617,612 - HMPREF1058_RS16685 0.18 -1.9 617,760 + HMPREF1058_RS16685 0.24 -1.8 617,761 - HMPREF1058_RS16685 0.24 +0.5 617,761 - HMPREF1058_RS16685 0.24 -1.1 617,804 + HMPREF1058_RS16685 0.25 -0.3 617,857 + HMPREF1058_RS16685 0.27 -0.7
Or see this region's nucleotide sequence