Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS16260

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS16265 and HMPREF1058_RS16260 are separated by 188 nucleotidesHMPREF1058_RS16260 and HMPREF1058_RS16255 overlap by 4 nucleotides HMPREF1058_RS16265: HMPREF1058_RS16265 - SLC13 family permease, at 718,880 to 720,742 _RS16265 HMPREF1058_RS16260: HMPREF1058_RS16260 - hotdog fold thioesterase, at 720,931 to 721,338 _RS16260 HMPREF1058_RS16255: HMPREF1058_RS16255 - isochorismate synthase, at 721,335 to 722,477 _RS16255 Position (kb) 720 721 722Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 719.975 kb on + strand, within HMPREF1058_RS16265at 719.975 kb on + strand, within HMPREF1058_RS16265at 719.978 kb on - strand, within HMPREF1058_RS16265at 719.988 kb on + strand, within HMPREF1058_RS16265at 720.011 kb on + strand, within HMPREF1058_RS16265at 720.164 kb on - strand, within HMPREF1058_RS16265at 720.164 kb on - strand, within HMPREF1058_RS16265at 720.188 kb on - strand, within HMPREF1058_RS16265at 720.310 kb on + strand, within HMPREF1058_RS16265at 720.422 kb on - strand, within HMPREF1058_RS16265at 720.490 kb on + strand, within HMPREF1058_RS16265at 720.580 kb on + strandat 720.581 kb on - strandat 720.581 kb on - strandat 720.629 kb on + strandat 720.683 kb on + strandat 720.716 kb on + strandat 720.716 kb on + strandat 720.724 kb on + strandat 720.743 kb on - strandat 720.784 kb on + strandat 720.785 kb on - strandat 720.853 kb on + strandat 720.883 kb on + strandat 720.891 kb on - strandat 720.927 kb on - strandat 721.041 kb on - strand, within HMPREF1058_RS16260at 721.126 kb on - strand, within HMPREF1058_RS16260at 721.151 kb on - strand, within HMPREF1058_RS16260at 721.169 kb on + strand, within HMPREF1058_RS16260at 721.255 kb on - strand, within HMPREF1058_RS16260at 721.255 kb on - strand, within HMPREF1058_RS16260at 721.257 kb on - strand, within HMPREF1058_RS16260at 721.257 kb on - strand, within HMPREF1058_RS16260at 721.265 kb on + strand, within HMPREF1058_RS16260at 721.265 kb on + strand, within HMPREF1058_RS16260at 721.265 kb on + strand, within HMPREF1058_RS16260at 721.269 kb on + strand, within HMPREF1058_RS16260at 721.269 kb on + strand, within HMPREF1058_RS16260at 721.270 kb on - strand, within HMPREF1058_RS16260at 721.349 kb on + strandat 721.350 kb on - strandat 721.351 kb on + strandat 721.351 kb on + strandat 721.352 kb on - strandat 721.356 kb on - strandat 721.550 kb on - strand, within HMPREF1058_RS16255at 721.699 kb on - strand, within HMPREF1058_RS16255at 721.701 kb on - strand, within HMPREF1058_RS16255at 721.854 kb on + strand, within HMPREF1058_RS16255at 721.854 kb on + strand, within HMPREF1058_RS16255at 721.855 kb on - strand, within HMPREF1058_RS16255at 721.855 kb on - strand, within HMPREF1058_RS16255at 721.855 kb on - strand, within HMPREF1058_RS16255at 722.022 kb on + strand, within HMPREF1058_RS16255at 722.022 kb on + strand, within HMPREF1058_RS16255at 722.023 kb on - strand, within HMPREF1058_RS16255at 722.023 kb on - strand, within HMPREF1058_RS16255at 722.034 kb on + strand, within HMPREF1058_RS16255at 722.089 kb on - strand, within HMPREF1058_RS16255at 722.090 kb on + strand, within HMPREF1058_RS16255at 722.114 kb on - strand, within HMPREF1058_RS16255at 722.159 kb on + strand, within HMPREF1058_RS16255at 722.160 kb on - strand, within HMPREF1058_RS16255at 722.266 kb on - strand, within HMPREF1058_RS16255at 722.316 kb on + strand, within HMPREF1058_RS16255at 722.316 kb on + strand, within HMPREF1058_RS16255at 722.316 kb on + strand, within HMPREF1058_RS16255at 722.317 kb on - strand, within HMPREF1058_RS16255at 722.317 kb on - strand, within HMPREF1058_RS16255

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
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719,975 + HMPREF1058_RS16265 0.59 -0.4
719,975 + HMPREF1058_RS16265 0.59 +1.0
719,978 - HMPREF1058_RS16265 0.59 -1.6
719,988 + HMPREF1058_RS16265 0.59 +0.4
720,011 + HMPREF1058_RS16265 0.61 -1.7
720,164 - HMPREF1058_RS16265 0.69 -1.2
720,164 - HMPREF1058_RS16265 0.69 +0.2
720,188 - HMPREF1058_RS16265 0.70 +0.6
720,310 + HMPREF1058_RS16265 0.77 +0.1
720,422 - HMPREF1058_RS16265 0.83 -0.8
720,490 + HMPREF1058_RS16265 0.86 -2.4
720,580 + -0.9
720,581 - +0.7
720,581 - -1.6
720,629 + -0.3
720,683 + +0.4
720,716 + -3.5
720,716 + -0.3
720,724 + -0.8
720,743 - -1.6
720,784 + -3.3
720,785 - +1.0
720,853 + -0.8
720,883 + -1.9
720,891 - -1.4
720,927 - -0.6
721,041 - HMPREF1058_RS16260 0.27 -2.4
721,126 - HMPREF1058_RS16260 0.48 +0.2
721,151 - HMPREF1058_RS16260 0.54 -1.4
721,169 + HMPREF1058_RS16260 0.58 -2.2
721,255 - HMPREF1058_RS16260 0.79 -0.0
721,255 - HMPREF1058_RS16260 0.79 -0.5
721,257 - HMPREF1058_RS16260 0.80 -2.8
721,257 - HMPREF1058_RS16260 0.80 -1.5
721,265 + HMPREF1058_RS16260 0.82 -2.4
721,265 + HMPREF1058_RS16260 0.82 -1.1
721,265 + HMPREF1058_RS16260 0.82 -2.3
721,269 + HMPREF1058_RS16260 0.83 -0.3
721,269 + HMPREF1058_RS16260 0.83 -2.4
721,270 - HMPREF1058_RS16260 0.83 -0.1
721,349 + -0.4
721,350 - -1.3
721,351 + -0.0
721,351 + +0.3
721,352 - -0.3
721,356 - -1.1
721,550 - HMPREF1058_RS16255 0.19 +1.8
721,699 - HMPREF1058_RS16255 0.32 -2.5
721,701 - HMPREF1058_RS16255 0.32 +1.5
721,854 + HMPREF1058_RS16255 0.45 -3.1
721,854 + HMPREF1058_RS16255 0.45 -0.3
721,855 - HMPREF1058_RS16255 0.45 -0.8
721,855 - HMPREF1058_RS16255 0.45 +0.7
721,855 - HMPREF1058_RS16255 0.45 -0.8
722,022 + HMPREF1058_RS16255 0.60 -2.3
722,022 + HMPREF1058_RS16255 0.60 -1.8
722,023 - HMPREF1058_RS16255 0.60 -1.9
722,023 - HMPREF1058_RS16255 0.60 -0.7
722,034 + HMPREF1058_RS16255 0.61 -2.8
722,089 - HMPREF1058_RS16255 0.66 +0.7
722,090 + HMPREF1058_RS16255 0.66 -3.3
722,114 - HMPREF1058_RS16255 0.68 +1.7
722,159 + HMPREF1058_RS16255 0.72 -3.6
722,160 - HMPREF1058_RS16255 0.72 +0.7
722,266 - HMPREF1058_RS16255 0.81 +0.5
722,316 + HMPREF1058_RS16255 0.86 -0.5
722,316 + HMPREF1058_RS16255 0.86 -0.1
722,316 + HMPREF1058_RS16255 0.86 -1.5
722,317 - HMPREF1058_RS16255 0.86 -2.4
722,317 - HMPREF1058_RS16255 0.86 -1.6

Or see this region's nucleotide sequence