Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16075 and HMPREF1058_RS16070 are separated by 4 nucleotides HMPREF1058_RS16070 and HMPREF1058_RS16065 are separated by 2 nucleotides
HMPREF1058_RS16075: HMPREF1058_RS16075 - hypothetical protein, at 766,300 to 767,286
_RS16075
HMPREF1058_RS16070: HMPREF1058_RS16070 - helix-turn-helix transcriptional regulator, at 767,291 to 767,578
_RS16070
HMPREF1058_RS16065: HMPREF1058_RS16065 - DUF1016 family protein, at 767,581 to 768,639
_RS16065
Position (kb) 767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 766.351 kb on + strand at 766.351 kb on + strand at 766.351 kb on + strand at 766.352 kb on - strand at 766.377 kb on + strand at 766.378 kb on - strand at 766.378 kb on - strand at 766.378 kb on - strand at 766.446 kb on - strand, within HMPREF1058_RS16075 at 766.526 kb on - strand, within HMPREF1058_RS16075 at 766.665 kb on + strand, within HMPREF1058_RS16075 at 766.666 kb on - strand, within HMPREF1058_RS16075 at 766.676 kb on + strand, within HMPREF1058_RS16075 at 766.811 kb on - strand, within HMPREF1058_RS16075 at 766.960 kb on - strand, within HMPREF1058_RS16075 at 767.043 kb on - strand, within HMPREF1058_RS16075 at 767.043 kb on - strand, within HMPREF1058_RS16075 at 767.048 kb on + strand, within HMPREF1058_RS16075 at 767.049 kb on - strand at 767.049 kb on - strand, within HMPREF1058_RS16075 at 767.101 kb on + strand, within HMPREF1058_RS16075 at 767.131 kb on + strand, within HMPREF1058_RS16075 at 767.159 kb on - strand, within HMPREF1058_RS16075 at 767.195 kb on + strand at 767.195 kb on + strand at 767.196 kb on - strand at 767.422 kb on - strand, within HMPREF1058_RS16070 at 767.453 kb on - strand, within HMPREF1058_RS16070 at 767.498 kb on + strand, within HMPREF1058_RS16070 at 767.498 kb on + strand, within HMPREF1058_RS16070 at 767.508 kb on - strand, within HMPREF1058_RS16070 at 767.563 kb on + strand at 767.573 kb on + strand at 767.582 kb on + strand at 767.583 kb on - strand at 767.702 kb on + strand, within HMPREF1058_RS16065 at 767.713 kb on + strand, within HMPREF1058_RS16065 at 767.713 kb on + strand, within HMPREF1058_RS16065 at 767.737 kb on + strand, within HMPREF1058_RS16065 at 767.882 kb on + strand, within HMPREF1058_RS16065 at 767.883 kb on - strand, within HMPREF1058_RS16065 at 767.924 kb on - strand, within HMPREF1058_RS16065 at 767.931 kb on - strand, within HMPREF1058_RS16065 at 768.048 kb on + strand, within HMPREF1058_RS16065 at 768.188 kb on - strand, within HMPREF1058_RS16065 at 768.231 kb on - strand, within HMPREF1058_RS16065 at 768.336 kb on + strand, within HMPREF1058_RS16065 at 768.336 kb on + strand, within HMPREF1058_RS16065 at 768.425 kb on + strand, within HMPREF1058_RS16065 at 768.465 kb on + strand, within HMPREF1058_RS16065 at 768.515 kb on + strand, within HMPREF1058_RS16065 at 768.555 kb on + strand at 768.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 766,351 + -1.1 766,351 + -0.1 766,351 + -0.4 766,352 - -0.4 766,377 + +0.3 766,378 - -0.4 766,378 - -1.1 766,378 - -2.4 766,446 - HMPREF1058_RS16075 0.15 +1.1 766,526 - HMPREF1058_RS16075 0.23 -1.5 766,665 + HMPREF1058_RS16075 0.37 -0.2 766,666 - HMPREF1058_RS16075 0.37 -0.2 766,676 + HMPREF1058_RS16075 0.38 +0.9 766,811 - HMPREF1058_RS16075 0.52 -1.2 766,960 - HMPREF1058_RS16075 0.67 +1.0 767,043 - HMPREF1058_RS16075 0.75 -1.0 767,043 - HMPREF1058_RS16075 0.75 +1.9 767,048 + HMPREF1058_RS16075 0.76 +1.1 767,049 - +1.1 767,049 - HMPREF1058_RS16075 0.76 -0.2 767,101 + HMPREF1058_RS16075 0.81 -0.8 767,131 + HMPREF1058_RS16075 0.84 -2.8 767,159 - HMPREF1058_RS16075 0.87 -1.8 767,195 + -1.6 767,195 + +0.8 767,196 - -0.1 767,422 - HMPREF1058_RS16070 0.45 -1.2 767,453 - HMPREF1058_RS16070 0.56 -0.2 767,498 + HMPREF1058_RS16070 0.72 -2.3 767,498 + HMPREF1058_RS16070 0.72 -3.4 767,508 - HMPREF1058_RS16070 0.75 -0.8 767,563 + +0.8 767,573 + -0.5 767,582 + -0.2 767,583 - -0.7 767,702 + HMPREF1058_RS16065 0.11 -1.3 767,713 + HMPREF1058_RS16065 0.12 -0.6 767,713 + HMPREF1058_RS16065 0.12 +0.7 767,737 + HMPREF1058_RS16065 0.15 -2.6 767,882 + HMPREF1058_RS16065 0.28 -3.0 767,883 - HMPREF1058_RS16065 0.29 -0.6 767,924 - HMPREF1058_RS16065 0.32 +0.7 767,931 - HMPREF1058_RS16065 0.33 -0.8 768,048 + HMPREF1058_RS16065 0.44 +1.3 768,188 - HMPREF1058_RS16065 0.57 -0.9 768,231 - HMPREF1058_RS16065 0.61 +1.1 768,336 + HMPREF1058_RS16065 0.71 -0.1 768,336 + HMPREF1058_RS16065 0.71 +0.6 768,425 + HMPREF1058_RS16065 0.80 -1.7 768,465 + HMPREF1058_RS16065 0.83 +0.6 768,515 + HMPREF1058_RS16065 0.88 -2.5 768,555 + -1.9 768,576 - -1.5
Or see this region's nucleotide sequence