Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15905 and HMPREF1058_RS15900 are separated by 102 nucleotides HMPREF1058_RS15900 and HMPREF1058_RS15895 are separated by 77 nucleotides HMPREF1058_RS15895 and HMPREF1058_RS15890 are separated by 164 nucleotides
HMPREF1058_RS15905: HMPREF1058_RS15905 - thioredoxin, at 810,045 to 810,503
_RS15905
HMPREF1058_RS15900: HMPREF1058_RS15900 - NADH peroxidase, at 810,606 to 811,157
_RS15900
HMPREF1058_RS15895: HMPREF1058_RS15895 - transcriptional repressor, at 811,235 to 811,645
_RS15895
HMPREF1058_RS15890: HMPREF1058_RS15890 - NAD(+) synthase, at 811,810 to 813,735
_RS15890
Position (kb) 811
812 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 810.242 kb on + strand, within HMPREF1058_RS15905 at 810.253 kb on - strand, within HMPREF1058_RS15905 at 810.279 kb on - strand, within HMPREF1058_RS15905 at 810.343 kb on + strand, within HMPREF1058_RS15905 at 810.344 kb on - strand, within HMPREF1058_RS15905 at 810.344 kb on - strand, within HMPREF1058_RS15905 at 810.347 kb on + strand, within HMPREF1058_RS15905 at 810.367 kb on + strand, within HMPREF1058_RS15905 at 810.442 kb on + strand, within HMPREF1058_RS15905 at 810.442 kb on + strand, within HMPREF1058_RS15905 at 810.563 kb on + strand at 810.564 kb on - strand at 810.564 kb on - strand at 810.564 kb on - strand at 810.564 kb on - strand at 810.587 kb on - strand at 810.588 kb on + strand at 810.589 kb on - strand at 810.589 kb on - strand at 810.593 kb on + strand at 810.602 kb on + strand at 810.603 kb on - strand at 810.628 kb on + strand at 810.629 kb on - strand at 810.629 kb on - strand at 810.687 kb on - strand, within HMPREF1058_RS15900 at 810.795 kb on - strand, within HMPREF1058_RS15900 at 810.831 kb on - strand, within HMPREF1058_RS15900 at 810.929 kb on + strand, within HMPREF1058_RS15900 at 810.930 kb on - strand, within HMPREF1058_RS15900 at 810.941 kb on + strand, within HMPREF1058_RS15900 at 810.942 kb on - strand, within HMPREF1058_RS15900 at 811.067 kb on + strand, within HMPREF1058_RS15900 at 811.082 kb on + strand, within HMPREF1058_RS15900 at 811.178 kb on - strand at 811.197 kb on - strand at 811.197 kb on - strand at 811.208 kb on + strand at 811.208 kb on + strand at 811.209 kb on - strand at 811.209 kb on - strand at 811.246 kb on + strand at 811.247 kb on - strand at 811.263 kb on - strand at 811.263 kb on - strand at 811.265 kb on - strand at 811.265 kb on - strand at 811.271 kb on - strand at 811.272 kb on + strand at 811.272 kb on + strand at 811.339 kb on + strand, within HMPREF1058_RS15895 at 811.343 kb on - strand, within HMPREF1058_RS15895 at 811.439 kb on - strand, within HMPREF1058_RS15895 at 811.480 kb on + strand, within HMPREF1058_RS15895 at 811.485 kb on + strand, within HMPREF1058_RS15895 at 811.485 kb on + strand, within HMPREF1058_RS15895 at 811.486 kb on - strand, within HMPREF1058_RS15895 at 811.493 kb on - strand, within HMPREF1058_RS15895 at 811.519 kb on + strand, within HMPREF1058_RS15895 at 811.520 kb on - strand, within HMPREF1058_RS15895 at 811.533 kb on + strand, within HMPREF1058_RS15895 at 811.589 kb on + strand, within HMPREF1058_RS15895 at 811.598 kb on + strand, within HMPREF1058_RS15895 at 811.617 kb on + strand at 811.618 kb on - strand at 811.696 kb on + strand at 811.717 kb on + strand at 811.755 kb on + strand at 811.790 kb on + strand at 811.792 kb on + strand at 811.792 kb on + strand at 811.794 kb on + strand at 811.794 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 810,242 + HMPREF1058_RS15905 0.43 -0.8 810,253 - HMPREF1058_RS15905 0.45 +1.6 810,279 - HMPREF1058_RS15905 0.51 -0.2 810,343 + HMPREF1058_RS15905 0.65 -0.1 810,344 - HMPREF1058_RS15905 0.65 -0.6 810,344 - HMPREF1058_RS15905 0.65 +1.6 810,347 + HMPREF1058_RS15905 0.66 +1.1 810,367 + HMPREF1058_RS15905 0.70 -1.1 810,442 + HMPREF1058_RS15905 0.86 +0.3 810,442 + HMPREF1058_RS15905 0.86 -0.1 810,563 + -1.9 810,564 - -1.5 810,564 - +0.7 810,564 - -2.2 810,564 - -1.0 810,587 - +0.3 810,588 + -0.0 810,589 - -0.5 810,589 - +0.5 810,593 + +0.5 810,602 + -3.0 810,603 - -2.1 810,628 + +0.7 810,629 - +0.7 810,629 - -2.4 810,687 - HMPREF1058_RS15900 0.15 +0.2 810,795 - HMPREF1058_RS15900 0.34 +0.6 810,831 - HMPREF1058_RS15900 0.41 -0.3 810,929 + HMPREF1058_RS15900 0.59 -2.7 810,930 - HMPREF1058_RS15900 0.59 -1.0 810,941 + HMPREF1058_RS15900 0.61 -0.9 810,942 - HMPREF1058_RS15900 0.61 +0.0 811,067 + HMPREF1058_RS15900 0.84 -1.6 811,082 + HMPREF1058_RS15900 0.86 -1.9 811,178 - +0.1 811,197 - +0.0 811,197 - -1.9 811,208 + -0.6 811,208 + +0.5 811,209 - +0.0 811,209 - -2.0 811,246 + -0.4 811,247 - -1.5 811,263 - -2.4 811,263 - -2.0 811,265 - -4.4 811,265 - -1.3 811,271 - -0.1 811,272 + -0.5 811,272 + -1.1 811,339 + HMPREF1058_RS15895 0.25 +1.1 811,343 - HMPREF1058_RS15895 0.26 -1.0 811,439 - HMPREF1058_RS15895 0.50 -0.8 811,480 + HMPREF1058_RS15895 0.60 -0.1 811,485 + HMPREF1058_RS15895 0.61 +2.4 811,485 + HMPREF1058_RS15895 0.61 -0.9 811,486 - HMPREF1058_RS15895 0.61 -2.8 811,493 - HMPREF1058_RS15895 0.63 -2.9 811,519 + HMPREF1058_RS15895 0.69 +0.2 811,520 - HMPREF1058_RS15895 0.69 -0.8 811,533 + HMPREF1058_RS15895 0.73 +0.9 811,589 + HMPREF1058_RS15895 0.86 -0.5 811,598 + HMPREF1058_RS15895 0.88 -1.2 811,617 + -0.5 811,618 - -1.9 811,696 + -1.4 811,717 + +0.3 811,755 + +0.5 811,790 + -0.5 811,792 + -0.6 811,792 + -0.3 811,794 + -0.2 811,794 + -0.3
Or see this region's nucleotide sequence