Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15720 and HMPREF1058_RS15715 are separated by 69 nucleotides HMPREF1058_RS15715 and HMPREF1058_RS15710 are separated by 218 nucleotides HMPREF1058_RS15710 and HMPREF1058_RS15705 overlap by 4 nucleotides
HMPREF1058_RS15720: HMPREF1058_RS15720 - DUF4476 domain-containing protein, at 849,681 to 850,292
_RS15720
HMPREF1058_RS15715: HMPREF1058_RS15715 - heavy metal-binding domain-containing protein, at 850,362 to 850,685
_RS15715
HMPREF1058_RS15710: HMPREF1058_RS15710 - cytidine deaminase, at 850,904 to 851,383
_RS15710
HMPREF1058_RS15705: HMPREF1058_RS15705 - winged helix DNA-binding domain-containing protein, at 851,380 to 852,420
_RS15705
Position (kb) 850
851
852 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 849.928 kb on + strand, within HMPREF1058_RS15720 at 849.929 kb on - strand, within HMPREF1058_RS15720 at 849.929 kb on - strand, within HMPREF1058_RS15720 at 849.960 kb on - strand, within HMPREF1058_RS15720 at 849.982 kb on + strand, within HMPREF1058_RS15720 at 849.985 kb on - strand, within HMPREF1058_RS15720 at 850.103 kb on - strand, within HMPREF1058_RS15720 at 850.201 kb on + strand, within HMPREF1058_RS15720 at 850.202 kb on - strand, within HMPREF1058_RS15720 at 850.202 kb on - strand, within HMPREF1058_RS15720 at 850.223 kb on + strand, within HMPREF1058_RS15720 at 850.279 kb on + strand at 850.293 kb on + strand at 850.294 kb on - strand at 850.310 kb on + strand at 850.409 kb on + strand, within HMPREF1058_RS15715 at 850.409 kb on + strand, within HMPREF1058_RS15715 at 850.410 kb on - strand, within HMPREF1058_RS15715 at 850.410 kb on - strand, within HMPREF1058_RS15715 at 850.455 kb on + strand, within HMPREF1058_RS15715 at 850.455 kb on + strand, within HMPREF1058_RS15715 at 850.463 kb on + strand, within HMPREF1058_RS15715 at 850.509 kb on - strand, within HMPREF1058_RS15715 at 850.623 kb on + strand, within HMPREF1058_RS15715 at 850.633 kb on + strand, within HMPREF1058_RS15715 at 850.634 kb on - strand, within HMPREF1058_RS15715 at 850.646 kb on + strand, within HMPREF1058_RS15715 at 850.646 kb on + strand, within HMPREF1058_RS15715 at 850.685 kb on + strand at 850.685 kb on + strand at 850.686 kb on - strand at 850.706 kb on - strand at 850.706 kb on - strand at 850.706 kb on - strand at 850.706 kb on - strand at 850.707 kb on + strand at 850.708 kb on - strand at 850.709 kb on + strand at 850.766 kb on - strand at 850.769 kb on + strand at 850.770 kb on - strand at 850.770 kb on - strand at 850.772 kb on - strand at 850.926 kb on + strand at 850.932 kb on + strand at 851.012 kb on + strand, within HMPREF1058_RS15710 at 851.012 kb on + strand, within HMPREF1058_RS15710 at 851.013 kb on - strand, within HMPREF1058_RS15710 at 851.128 kb on + strand, within HMPREF1058_RS15710 at 851.173 kb on - strand, within HMPREF1058_RS15710 at 851.253 kb on + strand, within HMPREF1058_RS15710 at 851.259 kb on + strand, within HMPREF1058_RS15710 at 851.287 kb on + strand, within HMPREF1058_RS15710 at 851.287 kb on + strand, within HMPREF1058_RS15710 at 851.321 kb on + strand, within HMPREF1058_RS15710 at 851.322 kb on - strand, within HMPREF1058_RS15710 at 851.324 kb on - strand, within HMPREF1058_RS15710 at 851.324 kb on - strand, within HMPREF1058_RS15710 at 851.325 kb on + strand, within HMPREF1058_RS15710 at 851.384 kb on + strand at 851.388 kb on + strand at 851.388 kb on + strand at 851.389 kb on - strand at 851.414 kb on + strand at 851.417 kb on + strand at 851.418 kb on - strand at 851.450 kb on + strand at 851.450 kb on + strand at 851.451 kb on - strand at 851.482 kb on + strand at 851.482 kb on + strand at 851.483 kb on - strand at 851.568 kb on - strand, within HMPREF1058_RS15705 at 851.568 kb on - strand, within HMPREF1058_RS15705 at 851.568 kb on - strand, within HMPREF1058_RS15705 at 851.602 kb on + strand, within HMPREF1058_RS15705 at 851.602 kb on + strand, within HMPREF1058_RS15705 at 851.619 kb on + strand, within HMPREF1058_RS15705 at 851.621 kb on + strand, within HMPREF1058_RS15705 at 851.621 kb on + strand at 851.622 kb on - strand, within HMPREF1058_RS15705 at 851.789 kb on + strand, within HMPREF1058_RS15705 at 851.790 kb on - strand, within HMPREF1058_RS15705 at 851.790 kb on - strand, within HMPREF1058_RS15705 at 851.866 kb on - strand, within HMPREF1058_RS15705 at 851.942 kb on + strand, within HMPREF1058_RS15705 at 851.942 kb on + strand, within HMPREF1058_RS15705 at 851.964 kb on + strand, within HMPREF1058_RS15705 at 851.964 kb on + strand at 851.965 kb on - strand, within HMPREF1058_RS15705 at 851.965 kb on - strand, within HMPREF1058_RS15705 at 851.965 kb on - strand, within HMPREF1058_RS15705 at 851.965 kb on - strand, within HMPREF1058_RS15705 at 852.052 kb on - strand, within HMPREF1058_RS15705 at 852.133 kb on - strand, within HMPREF1058_RS15705 at 852.155 kb on + strand, within HMPREF1058_RS15705 at 852.155 kb on + strand, within HMPREF1058_RS15705 at 852.216 kb on - strand, within HMPREF1058_RS15705 at 852.230 kb on - strand, within HMPREF1058_RS15705 at 852.294 kb on - strand, within HMPREF1058_RS15705 at 852.337 kb on - strand at 852.337 kb on - strand at 852.338 kb on + strand at 852.339 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 849,928 + HMPREF1058_RS15720 0.40 -1.8 849,929 - HMPREF1058_RS15720 0.41 +0.1 849,929 - HMPREF1058_RS15720 0.41 +0.5 849,960 - HMPREF1058_RS15720 0.46 -0.3 849,982 + HMPREF1058_RS15720 0.49 -0.3 849,985 - HMPREF1058_RS15720 0.50 +1.4 850,103 - HMPREF1058_RS15720 0.69 -2.8 850,201 + HMPREF1058_RS15720 0.85 -0.1 850,202 - HMPREF1058_RS15720 0.85 +2.3 850,202 - HMPREF1058_RS15720 0.85 +0.1 850,223 + HMPREF1058_RS15720 0.89 -3.1 850,279 + +0.2 850,293 + +0.5 850,294 - -0.6 850,310 + +1.5 850,409 + HMPREF1058_RS15715 0.15 +1.1 850,409 + HMPREF1058_RS15715 0.15 +0.2 850,410 - HMPREF1058_RS15715 0.15 -0.1 850,410 - HMPREF1058_RS15715 0.15 +1.0 850,455 + HMPREF1058_RS15715 0.29 +0.4 850,455 + HMPREF1058_RS15715 0.29 -1.1 850,463 + HMPREF1058_RS15715 0.31 -0.9 850,509 - HMPREF1058_RS15715 0.45 -0.9 850,623 + HMPREF1058_RS15715 0.81 -0.9 850,633 + HMPREF1058_RS15715 0.84 -0.4 850,634 - HMPREF1058_RS15715 0.84 -0.1 850,646 + HMPREF1058_RS15715 0.88 +0.3 850,646 + HMPREF1058_RS15715 0.88 +0.2 850,685 + -1.1 850,685 + +1.3 850,686 - +2.0 850,706 - +2.2 850,706 - -3.4 850,706 - -0.8 850,706 - +0.7 850,707 + -0.6 850,708 - +1.4 850,709 + -0.2 850,766 - -0.3 850,769 + -0.1 850,770 - +0.3 850,770 - -0.6 850,772 - -3.0 850,926 + -1.1 850,932 + -1.7 851,012 + HMPREF1058_RS15710 0.23 -2.0 851,012 + HMPREF1058_RS15710 0.23 -0.5 851,013 - HMPREF1058_RS15710 0.23 -1.7 851,128 + HMPREF1058_RS15710 0.47 -1.6 851,173 - HMPREF1058_RS15710 0.56 -2.2 851,253 + HMPREF1058_RS15710 0.73 +0.1 851,259 + HMPREF1058_RS15710 0.74 -1.2 851,287 + HMPREF1058_RS15710 0.80 -0.3 851,287 + HMPREF1058_RS15710 0.80 -1.6 851,321 + HMPREF1058_RS15710 0.87 -1.2 851,322 - HMPREF1058_RS15710 0.87 -0.3 851,324 - HMPREF1058_RS15710 0.88 -2.4 851,324 - HMPREF1058_RS15710 0.88 -0.2 851,325 + HMPREF1058_RS15710 0.88 -4.3 851,384 + +0.5 851,388 + -0.2 851,388 + +0.5 851,389 - -0.4 851,414 + -1.1 851,417 + +0.5 851,418 - -2.3 851,450 + +1.4 851,450 + -1.3 851,451 - -1.2 851,482 + -1.8 851,482 + +0.8 851,483 - -0.8 851,568 - HMPREF1058_RS15705 0.18 -0.6 851,568 - HMPREF1058_RS15705 0.18 +1.6 851,568 - HMPREF1058_RS15705 0.18 -0.3 851,602 + HMPREF1058_RS15705 0.21 +2.0 851,602 + HMPREF1058_RS15705 0.21 -0.7 851,619 + HMPREF1058_RS15705 0.23 -1.3 851,621 + HMPREF1058_RS15705 0.23 +0.6 851,621 + -1.3 851,622 - HMPREF1058_RS15705 0.23 -2.1 851,789 + HMPREF1058_RS15705 0.39 +0.1 851,790 - HMPREF1058_RS15705 0.39 -1.1 851,790 - HMPREF1058_RS15705 0.39 -0.7 851,866 - HMPREF1058_RS15705 0.47 -1.3 851,942 + HMPREF1058_RS15705 0.54 -0.6 851,942 + HMPREF1058_RS15705 0.54 -1.8 851,964 + HMPREF1058_RS15705 0.56 +0.4 851,964 + -1.1 851,965 - HMPREF1058_RS15705 0.56 -0.1 851,965 - HMPREF1058_RS15705 0.56 +0.5 851,965 - HMPREF1058_RS15705 0.56 -0.2 851,965 - HMPREF1058_RS15705 0.56 -0.0 852,052 - HMPREF1058_RS15705 0.65 -0.1 852,133 - HMPREF1058_RS15705 0.72 +0.3 852,155 + HMPREF1058_RS15705 0.74 +0.7 852,155 + HMPREF1058_RS15705 0.74 +2.3 852,216 - HMPREF1058_RS15705 0.80 -0.5 852,230 - HMPREF1058_RS15705 0.82 +0.9 852,294 - HMPREF1058_RS15705 0.88 -1.7 852,337 - -2.0 852,337 - +0.7 852,338 + -2.2 852,339 - -1.0
Or see this region's nucleotide sequence