Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS15635 and HMPREF1058_RS15630 are separated by 102 nucleotides HMPREF1058_RS15630 and HMPREF1058_RS15625 are separated by 134 nucleotides
HMPREF1058_RS15635: HMPREF1058_RS15635 - L-arabinose isomerase, at 869,011 to 870,540
_RS15635
HMPREF1058_RS15630: HMPREF1058_RS15630 - FGGY-family carbohydrate kinase, at 870,643 to 872,241
_RS15630
HMPREF1058_RS15625: HMPREF1058_RS15625 - transketolase, at 872,376 to 874,388
_RS15625
Position (kb) 870
871
872
873 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 869.690 kb on + strand, within HMPREF1058_RS15635 at 869.703 kb on - strand, within HMPREF1058_RS15635 at 869.722 kb on + strand, within HMPREF1058_RS15635 at 869.741 kb on + strand, within HMPREF1058_RS15635 at 869.847 kb on + strand, within HMPREF1058_RS15635 at 869.848 kb on - strand, within HMPREF1058_RS15635 at 869.881 kb on + strand, within HMPREF1058_RS15635 at 869.882 kb on - strand, within HMPREF1058_RS15635 at 870.035 kb on - strand, within HMPREF1058_RS15635 at 870.081 kb on + strand, within HMPREF1058_RS15635 at 870.102 kb on + strand, within HMPREF1058_RS15635 at 870.131 kb on + strand, within HMPREF1058_RS15635 at 870.146 kb on + strand, within HMPREF1058_RS15635 at 870.146 kb on + strand, within HMPREF1058_RS15635 at 870.146 kb on + strand, within HMPREF1058_RS15635 at 870.146 kb on + strand, within HMPREF1058_RS15635 at 870.146 kb on + strand, within HMPREF1058_RS15635 at 870.147 kb on - strand, within HMPREF1058_RS15635 at 870.147 kb on - strand, within HMPREF1058_RS15635 at 870.147 kb on - strand, within HMPREF1058_RS15635 at 870.179 kb on + strand, within HMPREF1058_RS15635 at 870.195 kb on - strand, within HMPREF1058_RS15635 at 870.327 kb on + strand, within HMPREF1058_RS15635 at 870.392 kb on - strand at 870.465 kb on + strand at 870.466 kb on - strand at 870.469 kb on + strand at 870.469 kb on - strand at 870.515 kb on - strand at 870.516 kb on + strand at 870.599 kb on - strand at 870.604 kb on - strand at 870.612 kb on + strand at 870.640 kb on - strand at 870.684 kb on + strand at 870.690 kb on - strand at 870.696 kb on - strand at 870.820 kb on - strand, within HMPREF1058_RS15630 at 870.845 kb on - strand, within HMPREF1058_RS15630 at 870.875 kb on + strand, within HMPREF1058_RS15630 at 870.876 kb on - strand, within HMPREF1058_RS15630 at 870.877 kb on + strand, within HMPREF1058_RS15630 at 870.937 kb on - strand, within HMPREF1058_RS15630 at 870.991 kb on - strand, within HMPREF1058_RS15630 at 871.038 kb on + strand, within HMPREF1058_RS15630 at 871.038 kb on + strand, within HMPREF1058_RS15630 at 871.038 kb on + strand, within HMPREF1058_RS15630 at 871.038 kb on + strand, within HMPREF1058_RS15630 at 871.039 kb on - strand, within HMPREF1058_RS15630 at 871.039 kb on - strand, within HMPREF1058_RS15630 at 871.070 kb on + strand, within HMPREF1058_RS15630 at 871.081 kb on - strand, within HMPREF1058_RS15630 at 871.103 kb on + strand, within HMPREF1058_RS15630 at 871.104 kb on - strand, within HMPREF1058_RS15630 at 871.179 kb on - strand, within HMPREF1058_RS15630 at 871.394 kb on + strand at 871.473 kb on - strand, within HMPREF1058_RS15630 at 871.505 kb on + strand, within HMPREF1058_RS15630 at 871.575 kb on - strand, within HMPREF1058_RS15630 at 871.578 kb on + strand, within HMPREF1058_RS15630 at 871.578 kb on + strand, within HMPREF1058_RS15630 at 871.584 kb on - strand, within HMPREF1058_RS15630 at 871.584 kb on - strand, within HMPREF1058_RS15630 at 871.584 kb on - strand, within HMPREF1058_RS15630 at 871.584 kb on - strand, within HMPREF1058_RS15630 at 871.669 kb on - strand, within HMPREF1058_RS15630 at 871.680 kb on - strand, within HMPREF1058_RS15630 at 871.734 kb on + strand, within HMPREF1058_RS15630 at 871.734 kb on + strand, within HMPREF1058_RS15630 at 871.744 kb on - strand, within HMPREF1058_RS15630 at 871.748 kb on - strand, within HMPREF1058_RS15630 at 871.872 kb on + strand, within HMPREF1058_RS15630 at 871.882 kb on - strand, within HMPREF1058_RS15630 at 871.988 kb on + strand, within HMPREF1058_RS15630 at 871.988 kb on + strand, within HMPREF1058_RS15630 at 872.060 kb on - strand, within HMPREF1058_RS15630 at 872.142 kb on - strand at 872.179 kb on + strand at 872.179 kb on + strand at 872.179 kb on + strand at 872.179 kb on + strand at 872.179 kb on + strand at 872.180 kb on - strand at 872.180 kb on - strand at 872.270 kb on + strand at 872.270 kb on + strand at 872.271 kb on - strand at 872.290 kb on + strand at 872.290 kb on + strand at 872.298 kb on + strand at 872.313 kb on + strand at 872.331 kb on + strand at 872.347 kb on + strand at 872.347 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 869,690 + HMPREF1058_RS15635 0.44 -2.0 869,703 - HMPREF1058_RS15635 0.45 -0.5 869,722 + HMPREF1058_RS15635 0.46 -2.7 869,741 + HMPREF1058_RS15635 0.48 -1.4 869,847 + HMPREF1058_RS15635 0.55 -0.1 869,848 - HMPREF1058_RS15635 0.55 +0.7 869,881 + HMPREF1058_RS15635 0.57 -1.5 869,882 - HMPREF1058_RS15635 0.57 -0.1 870,035 - HMPREF1058_RS15635 0.67 -0.6 870,081 + HMPREF1058_RS15635 0.70 -2.8 870,102 + HMPREF1058_RS15635 0.71 -3.2 870,131 + HMPREF1058_RS15635 0.73 +1.2 870,146 + HMPREF1058_RS15635 0.74 -2.0 870,146 + HMPREF1058_RS15635 0.74 -0.9 870,146 + HMPREF1058_RS15635 0.74 -3.3 870,146 + HMPREF1058_RS15635 0.74 -0.9 870,146 + HMPREF1058_RS15635 0.74 -2.5 870,147 - HMPREF1058_RS15635 0.74 -0.5 870,147 - HMPREF1058_RS15635 0.74 -1.7 870,147 - HMPREF1058_RS15635 0.74 -0.5 870,179 + HMPREF1058_RS15635 0.76 -0.5 870,195 - HMPREF1058_RS15635 0.77 -2.1 870,327 + HMPREF1058_RS15635 0.86 -0.6 870,392 - +0.9 870,465 + +0.1 870,466 - -0.2 870,469 + +0.1 870,469 - -1.0 870,515 - -1.1 870,516 + -1.0 870,599 - +0.3 870,604 - -1.1 870,612 + -1.9 870,640 - -0.9 870,684 + +4.4 870,690 - +1.1 870,696 - -2.4 870,820 - HMPREF1058_RS15630 0.11 -2.7 870,845 - HMPREF1058_RS15630 0.13 -0.5 870,875 + HMPREF1058_RS15630 0.15 -3.5 870,876 - HMPREF1058_RS15630 0.15 -0.8 870,877 + HMPREF1058_RS15630 0.15 -1.0 870,937 - HMPREF1058_RS15630 0.18 -0.5 870,991 - HMPREF1058_RS15630 0.22 -3.4 871,038 + HMPREF1058_RS15630 0.25 -1.2 871,038 + HMPREF1058_RS15630 0.25 -2.2 871,038 + HMPREF1058_RS15630 0.25 -0.8 871,038 + HMPREF1058_RS15630 0.25 -1.8 871,039 - HMPREF1058_RS15630 0.25 -0.9 871,039 - HMPREF1058_RS15630 0.25 +1.2 871,070 + HMPREF1058_RS15630 0.27 -2.3 871,081 - HMPREF1058_RS15630 0.27 -0.2 871,103 + HMPREF1058_RS15630 0.29 -1.0 871,104 - HMPREF1058_RS15630 0.29 -1.5 871,179 - HMPREF1058_RS15630 0.34 -2.9 871,394 + +0.7 871,473 - HMPREF1058_RS15630 0.52 -1.1 871,505 + HMPREF1058_RS15630 0.54 -3.4 871,575 - HMPREF1058_RS15630 0.58 -1.2 871,578 + HMPREF1058_RS15630 0.58 -0.5 871,578 + HMPREF1058_RS15630 0.58 -2.5 871,584 - HMPREF1058_RS15630 0.59 +0.7 871,584 - HMPREF1058_RS15630 0.59 -1.4 871,584 - HMPREF1058_RS15630 0.59 -0.7 871,584 - HMPREF1058_RS15630 0.59 -2.7 871,669 - HMPREF1058_RS15630 0.64 +2.1 871,680 - HMPREF1058_RS15630 0.65 -2.8 871,734 + HMPREF1058_RS15630 0.68 -0.3 871,734 + HMPREF1058_RS15630 0.68 -1.1 871,744 - HMPREF1058_RS15630 0.69 -3.9 871,748 - HMPREF1058_RS15630 0.69 -4.7 871,872 + HMPREF1058_RS15630 0.77 -3.5 871,882 - HMPREF1058_RS15630 0.77 +2.3 871,988 + HMPREF1058_RS15630 0.84 -2.0 871,988 + HMPREF1058_RS15630 0.84 -0.8 872,060 - HMPREF1058_RS15630 0.89 -1.3 872,142 - -2.7 872,179 + -0.7 872,179 + -0.5 872,179 + -1.9 872,179 + -1.8 872,179 + +3.1 872,180 - -2.2 872,180 - +0.1 872,270 + -1.0 872,270 + -0.3 872,271 - +0.7 872,290 + -1.0 872,290 + +0.2 872,298 + +1.4 872,313 + -0.7 872,331 + -0.6 872,347 + +1.4 872,347 + +0.6
Or see this region's nucleotide sequence