Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS15075

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
1,023,818	-				+4.0
1,023,818	-				-0.3
1,023,912	+				-1.2
1,023,922	-				+1.4
1,023,925	+				+0.4
1,023,926	+				-1.3
1,023,927	-				+1.4
1,023,957	+				-0.3
1,024,006	+				-0.3
1,024,011	-				-2.1
1,024,037	-				-0.9
1,024,037	-				-1.8
1,024,106	+				+1.2
1,024,108	+				+1.0
1,024,108	+				+0.2
1,024,109	-				-1.8
1,024,109	-				-1.6
1,024,109	-				-0.1
1,024,112	+				+0.5
1,024,113	-				+2.0
1,024,128	+				-0.2
1,024,129	-				-0.5
1,024,140	+				-1.8
1,024,147	-				-0.3
1,024,150	+				-2.7
1,024,151	-				+0.1
1,024,396	+				-1.0
1,024,396	+				+1.6
1,024,398	+				-2.1
1,024,399	-				-1.1
1,024,405	-				+0.5
1,024,439	+				-0.3
1,024,460	+				+1.5
1,024,461	-				+1.4
1,024,508	-				+0.2
1,024,518	+				-0.1
1,024,518	+				+0.5
1,024,518	+				-0.4
1,024,519	-				+0.9
1,024,519	-				-0.7
1,024,522	+				-1.0
1,024,523	-				-0.5
1,024,523	-				-0.7
1,024,543	+				-1.6
1,024,544	-				+0.8
1,024,544	-				+0.1
1,024,600	+				+0.2
1,024,600	+				-0.3
1,024,623	+				-1.3
1,024,659	+				-0.6
1,024,660	-				-3.2
1,024,665	+				-0.8
1,024,801	-				-0.1
1,024,806	+				-1.1
1,024,850	+				-1.6
1,024,862	-				-2.1
1,024,893	+		HMPREF1058_RS15075	0.11	-0.4
1,024,894	-		HMPREF1058_RS15075	0.11	-2.1
1,024,894	-		HMPREF1058_RS15075	0.11	-1.4
1,025,180	-		HMPREF1058_RS15075	0.43	+0.3
1,025,195	+		HMPREF1058_RS15075	0.45	-3.0
1,025,195	+		HMPREF1058_RS15075	0.45	-2.3
1,025,198	+		HMPREF1058_RS15075	0.45	-0.5
1,025,198	+		HMPREF1058_RS15075	0.45	+0.9
1,025,224	+		HMPREF1058_RS15075	0.48	-3.8
1,025,251	+		HMPREF1058_RS15075	0.51	-2.9
1,025,251	+		HMPREF1058_RS15075	0.51	+2.1
1,025,252	-				-0.3
1,025,270	+		HMPREF1058_RS15075	0.53	-0.5
1,025,274	+		HMPREF1058_RS15075	0.54	-2.8
1,025,275	-		HMPREF1058_RS15075	0.54	-1.1
1,025,296	+		HMPREF1058_RS15075	0.56	+1.5
1,025,296	+				+0.7
1,025,303	+		HMPREF1058_RS15075	0.57	-0.6
1,025,336	-				+1.1
1,025,340	+		HMPREF1058_RS15075	0.61	-2.2
1,025,397	-		HMPREF1058_RS15075	0.68	-0.7
1,025,397	-		HMPREF1058_RS15075	0.68	-1.3
1,025,450	+				+0.1
1,025,451	-		HMPREF1058_RS15075	0.74	-0.9
1,025,507	+		HMPREF1058_RS15075	0.80	-0.5
1,025,508	-		HMPREF1058_RS15075	0.80	-1.6
1,025,508	-		HMPREF1058_RS15075	0.80	-2.1
1,025,538	+		HMPREF1058_RS15075	0.84	-2.2
1,025,539	-		HMPREF1058_RS15075	0.84	-2.8
1,025,539	-		HMPREF1058_RS15075	0.84	-1.2
1,025,672	+				+0.1
1,025,672	+				-0.5
1,025,680	+				+0.0
1,025,680	+				+2.1
1,025,681	-				+0.1
1,025,684	-				-0.2
1,025,684	-				-0.9
1,025,687	+				-1.6
1,025,719	-				-1.3
1,025,719	-				+0.4
1,025,745	-				+1.1