Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14785

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
1,102,312	-		HMPREF1058_RS14790	0.24	+0.9
1,102,432	+		HMPREF1058_RS14790	0.34	-1.5
1,102,432	+		HMPREF1058_RS14790	0.34	-4.2
1,102,433	-		HMPREF1058_RS14790	0.34	-1.0
1,102,437	-		HMPREF1058_RS14790	0.35	-1.8
1,102,437	-		HMPREF1058_RS14790	0.35	+1.8
1,102,446	+		HMPREF1058_RS14790	0.36	-3.3
1,102,447	-		HMPREF1058_RS14790	0.36	+0.8
1,102,450	+		HMPREF1058_RS14790	0.36	-2.2
1,102,451	-		HMPREF1058_RS14790	0.36	-2.5
1,102,568	+		HMPREF1058_RS14790	0.46	-0.9
1,102,645	+		HMPREF1058_RS14790	0.52	+0.2
1,102,646	-		HMPREF1058_RS14790	0.52	-3.5
1,102,646	-		HMPREF1058_RS14790	0.52	-1.0
1,102,656	+		HMPREF1058_RS14790	0.53	-1.9
1,102,702	+		HMPREF1058_RS14790	0.57	-0.6
1,102,703	-		HMPREF1058_RS14790	0.57	-2.4
1,102,750	+		HMPREF1058_RS14790	0.61	-4.0
1,102,814	-		HMPREF1058_RS14790	0.67	-0.5
1,102,816	-		HMPREF1058_RS14790	0.67	-1.1
1,102,816	-		HMPREF1058_RS14790	0.67	-4.7
1,102,816	-		HMPREF1058_RS14790	0.67	-1.5
1,102,840	+		HMPREF1058_RS14790	0.69	-1.2
1,102,843	+		HMPREF1058_RS14790	0.69	-0.6
1,102,892	+		HMPREF1058_RS14790	0.73	-1.8
1,102,893	-		HMPREF1058_RS14790	0.73	-1.5
1,102,935	+		HMPREF1058_RS14790	0.77	-1.6
1,102,935	+		HMPREF1058_RS14790	0.77	-1.5
1,102,935	+		HMPREF1058_RS14790	0.77	-2.5
1,102,936	-		HMPREF1058_RS14790	0.77	-1.9
1,102,940	-		HMPREF1058_RS14790	0.77	-1.2
1,102,977	+		HMPREF1058_RS14790	0.80	-1.6
1,103,012	-		HMPREF1058_RS14790	0.83	-1.5
1,103,052	+		HMPREF1058_RS14790	0.87	-0.3
1,103,053	-		HMPREF1058_RS14790	0.87	-2.8
1,103,053	-		HMPREF1058_RS14790	0.87	-3.3
1,103,110	+				+1.2
1,103,136	-				-0.3
1,103,144	-				-0.8
1,103,202	+				+0.7
1,103,304	-				-1.0
1,103,343	-		HMPREF1058_RS14785	0.11	+0.1
1,103,475	+		HMPREF1058_RS14785	0.23	-2.1
1,103,475	+		HMPREF1058_RS14785	0.23	-2.2
1,103,475	+		HMPREF1058_RS14785	0.23	-0.5
1,103,475	+		HMPREF1058_RS14785	0.23	-1.6
1,103,476	-		HMPREF1058_RS14785	0.23	-1.0
1,103,476	-		HMPREF1058_RS14785	0.23	+0.5
1,103,476	-		HMPREF1058_RS14785	0.23	-0.1
1,103,491	+		HMPREF1058_RS14785	0.25	-0.5
1,103,532	-		HMPREF1058_RS14785	0.28	-1.3
1,103,615	+		HMPREF1058_RS14785	0.36	-2.0
1,103,621	+		HMPREF1058_RS14785	0.37	-2.4
1,103,752	-		HMPREF1058_RS14785	0.49	-1.2
1,103,887	+		HMPREF1058_RS14785	0.62	-0.8
1,103,902	+		HMPREF1058_RS14785	0.63	+0.2
1,103,979	+		HMPREF1058_RS14785	0.70	-1.5
1,104,096	-		HMPREF1058_RS14785	0.81	-1.8
1,104,141	-		HMPREF1058_RS14785	0.85	-1.5
1,104,152	-		HMPREF1058_RS14785	0.86	-1.9
1,104,370	-				-2.4
1,104,373	+				-1.5
1,104,377	+				+0.5
1,104,421	-				+0.2
1,104,475	-				-1.0
1,104,475	-				-0.1
1,104,489	+				+1.4
1,104,493	+				+0.7
1,104,564	-				+1.6
1,104,564	-				-0.6
1,104,569	-				-0.8
1,104,708	+		HMPREF1058_RS14780	0.12	+0.4
1,104,709	-		HMPREF1058_RS14780	0.12	+0.8
1,104,762	+		HMPREF1058_RS14780	0.15	-1.0
1,104,763	-		HMPREF1058_RS14780	0.15	-0.8
1,104,789	+		HMPREF1058_RS14780	0.17	+0.3
1,104,795	+		HMPREF1058_RS14780	0.17	-1.7
1,104,795	+		HMPREF1058_RS14780	0.17	+0.6
1,104,795	+		HMPREF1058_RS14780	0.17	-0.4
1,104,796	-		HMPREF1058_RS14780	0.17	-1.8
1,104,796	-		HMPREF1058_RS14780	0.17	-2.1
1,104,796	-		HMPREF1058_RS14780	0.17	+2.2
1,104,880	+		HMPREF1058_RS14780	0.22	+1.1
1,104,918	+		HMPREF1058_RS14780	0.25	-0.2
1,104,954	+				+1.6
1,104,954	+		HMPREF1058_RS14780	0.27	+0.8
1,104,969	+		HMPREF1058_RS14780	0.27	-1.3
1,104,970	-		HMPREF1058_RS14780	0.28	+0.8
1,104,984	+		HMPREF1058_RS14780	0.28	-0.7
1,105,026	+		HMPREF1058_RS14780	0.31	+0.7
1,105,095	+		HMPREF1058_RS14780	0.35	-1.5
1,105,284	+		HMPREF1058_RS14780	0.46	-2.4
1,105,296	+		HMPREF1058_RS14780	0.47	+1.0
1,105,296	+		HMPREF1058_RS14780	0.47	+0.5