Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14285

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
1,244,210	+		HMPREF1058_RS14295	0.38	-0.3
1,244,211	-		HMPREF1058_RS14295	0.38	+0.2
1,244,216	-		HMPREF1058_RS14295	0.38	+0.8
1,244,230	-		HMPREF1058_RS14295	0.40	+1.4
1,244,230	-		HMPREF1058_RS14295	0.40	-0.7
1,244,251	-		HMPREF1058_RS14295	0.43	+0.9
1,244,357	+		HMPREF1058_RS14295	0.58	+0.0
1,244,358	-		HMPREF1058_RS14295	0.58	+0.8
1,244,359	+		HMPREF1058_RS14295	0.59	-1.4
1,244,360	+		HMPREF1058_RS14295	0.59	-2.7
1,244,462	-		HMPREF1058_RS14295	0.73	-0.2
1,244,472	+		HMPREF1058_RS14295	0.75	-0.2
1,244,614	+				+0.5
1,244,650	-				+0.0
1,244,702	-				-2.9
1,244,738	+		HMPREF1058_RS14290	0.15	+0.2
1,244,785	+		HMPREF1058_RS14290	0.24	-1.3
1,244,894	+		HMPREF1058_RS14290	0.44	-1.4
1,244,900	-		HMPREF1058_RS14290	0.45	-0.7
1,244,907	-		HMPREF1058_RS14290	0.46	-0.2
1,244,914	+		HMPREF1058_RS14290	0.47	+0.4
1,244,992	-		HMPREF1058_RS14290	0.62	+0.3
1,245,009	+		HMPREF1058_RS14290	0.65	-1.1
1,245,009	+		HMPREF1058_RS14290	0.65	+1.7
1,245,010	-		HMPREF1058_RS14290	0.65	+0.6
1,245,185	+				-0.2
1,245,313	+		HMPREF1058_RS14285	0.38	-2.1
1,245,404	+				-0.8
1,245,421	-				-0.8
1,245,427	+		HMPREF1058_RS14285	0.73	-0.0
1,245,487	+				-2.0
1,245,526	-				-1.1
1,246,420	+				+0.2
1,246,420	+				+0.4
1,246,474	+				-0.6