Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS14120

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
1,281,357	+		HMPREF1058_RS14125	0.47	-0.6
1,281,369	+		HMPREF1058_RS14125	0.48	+0.1
1,281,481	-		HMPREF1058_RS14125	0.56	+0.5
1,281,801	+		HMPREF1058_RS14125	0.80	-1.9
1,281,802	-		HMPREF1058_RS14125	0.80	-0.9
1,281,820	+		HMPREF1058_RS14125	0.81	-0.3
1,281,826	+		HMPREF1058_RS14125	0.82	-0.9
1,281,826	+		HMPREF1058_RS14125	0.82	-1.1
1,281,833	-		HMPREF1058_RS14125	0.82	-0.7
1,281,840	+		HMPREF1058_RS14125	0.83	-1.3
1,281,841	-		HMPREF1058_RS14125	0.83	-0.7
1,281,842	+		HMPREF1058_RS14125	0.83	-0.8
1,281,843	-		HMPREF1058_RS14125	0.83	-3.8
1,281,843	-		HMPREF1058_RS14125	0.83	-1.2
1,281,843	-		HMPREF1058_RS14125	0.83	+0.2
1,281,843	-		HMPREF1058_RS14125	0.83	-0.5
1,281,843	-		HMPREF1058_RS14125	0.83	-0.8
1,281,844	+		HMPREF1058_RS14125	0.83	-1.9
1,281,845	-		HMPREF1058_RS14125	0.83	-0.4
1,281,845	-		HMPREF1058_RS14125	0.83	-1.6
1,281,845	-		HMPREF1058_RS14125	0.83	-0.6
1,281,848	+		HMPREF1058_RS14125	0.83	-0.9
1,281,848	+		HMPREF1058_RS14125	0.83	-3.2
1,281,953	-				-0.0
1,281,976	-				+0.6
1,282,026	+				-2.5
1,282,027	-				-0.0
1,282,030	+				-0.6
1,282,031	-				-1.2
1,282,040	+				+0.7
1,282,040	+				+0.2
1,282,040	+				-0.9
1,282,040	+				-0.7
1,282,042	+				-1.0
1,282,043	-				-1.7
1,282,043	-				+0.6
1,282,043	-				-1.7
1,282,087	+				+0.6
1,282,088	-				+0.4
1,282,092	-				+0.2
1,282,169	-				+0.5
1,282,347	+				-0.3
1,282,435	+				-1.3
1,282,435	+				-1.3
1,282,435	+				-1.7
1,282,435	+				-1.2
1,282,436	-				-1.4
1,282,436	-				-1.0
1,282,436	-				-2.4
1,282,444	-				+0.3
1,282,587	+		HMPREF1058_RS14120	0.14	-0.9
1,282,617	+		HMPREF1058_RS14120	0.16	-1.5
1,282,617	+		HMPREF1058_RS14120	0.16	-3.1
1,282,668	+		HMPREF1058_RS14120	0.19	-1.7
1,282,715	+		HMPREF1058_RS14120	0.21	-1.7
1,282,839	-		HMPREF1058_RS14120	0.28	+0.3
1,282,839	-		HMPREF1058_RS14120	0.28	-0.1
1,282,863	-		HMPREF1058_RS14120	0.29	-1.7
1,282,871	+		HMPREF1058_RS14120	0.30	-2.1
1,282,882	+		HMPREF1058_RS14120	0.31	-1.1
1,282,891	+		HMPREF1058_RS14120	0.31	-1.6
1,282,906	+		HMPREF1058_RS14120	0.32	-0.3
1,282,942	+		HMPREF1058_RS14120	0.34	-1.2
1,283,049	-		HMPREF1058_RS14120	0.40	-1.5
1,283,100	+		HMPREF1058_RS14120	0.43	-2.4
1,283,100	+		HMPREF1058_RS14120	0.43	-0.6
1,283,101	-		HMPREF1058_RS14120	0.43	-0.7
1,283,101	-				+1.6
1,283,169	-		HMPREF1058_RS14120	0.46	-0.8
1,283,236	+		HMPREF1058_RS14120	0.50	-1.1
1,283,236	+		HMPREF1058_RS14120	0.50	-1.4
1,283,525	+		HMPREF1058_RS14120	0.66	-3.8
1,283,526	-		HMPREF1058_RS14120	0.66	-1.0
1,283,608	+		HMPREF1058_RS14120	0.71	-0.3
1,283,789	+				-0.9
1,283,815	+		HMPREF1058_RS14120	0.82	+0.1
1,283,825	-		HMPREF1058_RS14120	0.83	-3.8
1,283,987	-				-0.2
1,284,057	+				-1.5
1,284,148	+				+1.5
1,284,149	-				-0.8
1,284,192	+				-0.4
1,284,193	-				+0.7
1,284,195	-				+0.8
1,284,195	-				-1.5
1,284,195	-				-0.0
1,284,201	-				+1.1
1,284,204	-				-1.2
1,284,210	+				+0.5
1,284,229	+				-2.1
1,284,253	-				+1.3
1,284,259	-				+0.7
1,284,546	-				-1.0
1,284,584	+				-1.6
1,284,588	+				-2.9
1,284,624	+				-2.0
1,284,642	+				+0.4
1,284,642	+				-3.9
1,284,650	+				+0.4
1,284,680	+				-0.3
1,284,680	+				+0.1
1,284,776	+		HMPREF1058_RS14110	0.26	-1.1
1,285,000	+		HMPREF1058_RS14110	0.88	-1.1