Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13855

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
1,340,482	-		HMPREF1058_RS13860	0.72	-1.3
1,340,483	+		HMPREF1058_RS13860	0.72	+0.6
1,340,484	-		HMPREF1058_RS13860	0.72	-1.1
1,340,503	-		HMPREF1058_RS13860	0.73	+0.0
1,340,544	+		HMPREF1058_RS13860	0.74	-0.1
1,340,544	+		HMPREF1058_RS13860	0.74	-0.6
1,340,624	+		HMPREF1058_RS13860	0.76	+0.2
1,340,624	+		HMPREF1058_RS13860	0.76	+1.4
1,340,624	+		HMPREF1058_RS13860	0.76	+1.0
1,340,625	-		HMPREF1058_RS13860	0.76	-0.2
1,340,625	-		HMPREF1058_RS13860	0.76	-0.6
1,340,625	-		HMPREF1058_RS13860	0.76	-0.5
1,340,629	-		HMPREF1058_RS13860	0.76	-0.2
1,340,629	-		HMPREF1058_RS13860	0.76	-2.2
1,340,736	+		HMPREF1058_RS13860	0.80	-1.6
1,340,736	+		HMPREF1058_RS13860	0.80	-3.3
1,340,736	+		HMPREF1058_RS13860	0.80	-2.0
1,340,737	-		HMPREF1058_RS13860	0.80	-1.6
1,340,737	-		HMPREF1058_RS13860	0.80	-0.0
1,340,737	-		HMPREF1058_RS13860	0.80	-1.5
1,340,750	+		HMPREF1058_RS13860	0.80	-2.0
1,340,776	+		HMPREF1058_RS13860	0.81	-1.1
1,340,839	-		HMPREF1058_RS13860	0.83	-0.5
1,340,875	+		HMPREF1058_RS13860	0.84	-0.9
1,340,875	+		HMPREF1058_RS13860	0.84	-1.6
1,341,006	-		HMPREF1058_RS13860	0.88	+2.7
1,341,025	+		HMPREF1058_RS13860	0.89	+0.5
1,341,026	-		HMPREF1058_RS13860	0.89	-1.4
1,341,061	-		HMPREF1058_RS13860	0.90	-1.8
1,341,075	-				-0.6
1,341,131	-				+1.0
1,341,146	+				-0.6
1,341,147	-				+0.7
1,341,255	+				+0.8
1,341,255	+				-1.6
1,341,256	-				-1.9
1,341,404	-				-3.4
1,341,472	-		HMPREF1058_RS13855	0.11	-1.1
1,341,519	+		HMPREF1058_RS13855	0.20	-1.3
1,341,559	+		HMPREF1058_RS13855	0.27	-0.3
1,341,559	+		HMPREF1058_RS13855	0.27	-1.1
1,341,559	+		HMPREF1058_RS13855	0.27	-0.2
1,341,560	-		HMPREF1058_RS13855	0.28	-1.3
1,341,812	+		HMPREF1058_RS13855	0.76	-1.8
1,341,922	+				+0.3
1,341,930	+				-2.1
1,342,097	-				+0.5
1,342,124	+				-2.2
1,342,125	-				-0.1
1,342,127	+				-0.5
1,342,182	-				-1.7
1,342,194	-				-1.4
1,342,265	+				+0.2
1,342,266	-				-0.6
1,342,267	+				+1.2
1,342,267	+				-2.9
1,342,268	-				-0.3
1,342,284	+				+0.2
1,342,356	-				-1.7
1,342,459	+				-0.3
1,342,460	-				-0.3
1,342,460	-				+0.6
1,342,525	+		HMPREF1058_RS13850	0.12	-1.1
1,342,594	+		HMPREF1058_RS13850	0.16	-1.4
1,342,595	-		HMPREF1058_RS13850	0.16	+0.5
1,342,595	-		HMPREF1058_RS13850	0.16	+1.6
1,342,621	+		HMPREF1058_RS13850	0.18	+0.2
1,342,694	+		HMPREF1058_RS13850	0.23	-0.3
1,342,713	+		HMPREF1058_RS13850	0.24	+2.8
1,342,714	-		HMPREF1058_RS13850	0.24	-0.9
1,342,714	-		HMPREF1058_RS13850	0.24	-0.1
1,342,714	-		HMPREF1058_RS13850	0.24	+0.2
1,342,715	+		HMPREF1058_RS13850	0.24	+2.2
1,342,716	-		HMPREF1058_RS13850	0.24	+0.2
1,342,754	-		HMPREF1058_RS13850	0.26	-0.2
1,342,903	-		HMPREF1058_RS13850	0.36	-0.3
1,342,913	+		HMPREF1058_RS13850	0.36	+0.6
1,342,924	-		HMPREF1058_RS13850	0.37	+1.0
1,342,924	-		HMPREF1058_RS13850	0.37	+2.5