Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS13730

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
1,385,217	+				+0.2
1,385,221	+				-2.3
1,385,221	+				+0.0
1,385,222	-				+0.1
1,385,223	+				-2.1
1,385,230	-				+0.5
1,385,230	-				-0.2
1,385,231	+				-0.5
1,385,231	+				+1.3
1,385,231	+				-0.9
1,385,232	-				-0.4
1,385,232	-				-1.4
1,385,232	-				+0.1
1,385,235	+				-0.1
1,385,236	-				+0.1
1,385,253	-				-0.3
1,385,298	+				+1.0
1,385,312	+				+0.3
1,385,624	-		HMPREF1058_RS13735	0.37	-1.1
1,385,666	-		HMPREF1058_RS13735	0.42	-2.3
1,385,817	+		HMPREF1058_RS13735	0.60	-0.5
1,385,817	+		HMPREF1058_RS13735	0.60	-0.7
1,385,820	-		HMPREF1058_RS13735	0.60	-0.3
1,385,826	+		HMPREF1058_RS13735	0.61	-0.4
1,385,827	-		HMPREF1058_RS13735	0.61	+1.4
1,385,899	-		HMPREF1058_RS13735	0.69	+2.5
1,385,913	+		HMPREF1058_RS13735	0.71	-0.3
1,385,935	-		HMPREF1058_RS13735	0.73	+1.2
1,385,953	+		HMPREF1058_RS13735	0.76	-0.5
1,385,996	-		HMPREF1058_RS13735	0.81	-0.1
1,386,145	+				-0.1
1,386,256	+		HMPREF1058_RS13730	0.10	+1.5
1,386,257	-		HMPREF1058_RS13730	0.10	-1.8
1,386,602	-		HMPREF1058_RS13730	0.61	-2.8
1,386,624	-		HMPREF1058_RS13730	0.65	-1.7
1,386,624	-		HMPREF1058_RS13730	0.65	+0.1
1,386,695	-		HMPREF1058_RS13730	0.75	-1.4
1,386,752	-		HMPREF1058_RS13730	0.84	-3.3
1,386,752	-		HMPREF1058_RS13730	0.84	+0.6
1,386,752	-		HMPREF1058_RS13730	0.84	-3.1
1,386,814	+				-1.3
1,386,843	-				+1.5
1,386,863	-				-2.0
1,386,969	+				-0.3
1,387,026	-				-0.7
1,387,057	+				+0.3
1,387,067	-				-1.2
1,387,106	-				-3.5
1,387,129	-		HMPREF1058_RS13725	0.10	+1.4
1,387,277	-		HMPREF1058_RS13725	0.35	+0.6
1,387,338	+		HMPREF1058_RS13725	0.45	+1.0
1,387,338	+		HMPREF1058_RS13725	0.45	-0.3
1,387,469	-		HMPREF1058_RS13725	0.67	-1.7
1,387,470	+		HMPREF1058_RS13725	0.67	-0.1
1,387,584	+		HMPREF1058_RS13725	0.86	-1.2
1,387,585	-		HMPREF1058_RS13725	0.86	-2.0
1,387,585	-		HMPREF1058_RS13725	0.86	+0.1
1,387,605	-		HMPREF1058_RS13725	0.90	-1.7
1,387,628	+				-0.4
1,387,628	+				-0.0
1,387,628	+				-0.4
1,387,631	-				+0.4
1,387,631	-				-0.6
1,387,665	-				-0.3
1,387,677	-				-0.7
1,387,750	+				+0.6
1,387,750	+				-1.0
1,387,751	+				-1.2
1,387,751	-				-0.2
1,387,795	+		HMPREF1058_RS13720	0.10	-1.1
1,387,813	-		HMPREF1058_RS13720	0.12	+1.4
1,387,817	+		HMPREF1058_RS13720	0.12	-1.7
1,387,818	-		HMPREF1058_RS13720	0.12	-0.7