Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS12780

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
33,334	-		HMPREF1058_RS12785	0.58	+1.7
33,342	+		HMPREF1058_RS12785	0.59	-1.1
33,342	+		HMPREF1058_RS12785	0.59	-1.2
33,411	+		HMPREF1058_RS12785	0.63	-1.5
33,473	+		HMPREF1058_RS12785	0.66	-0.8
33,473	+		HMPREF1058_RS12785	0.66	+0.5
33,535	-		HMPREF1058_RS12785	0.69	-0.6
33,567	+		HMPREF1058_RS12785	0.71	+1.3
33,682	-		HMPREF1058_RS12785	0.78	-0.7
33,731	+		HMPREF1058_RS12785	0.80	-0.5
33,732	-				+0.1
33,757	-		HMPREF1058_RS12785	0.82	+0.5
33,757	-		HMPREF1058_RS12785	0.82	-1.9
33,757	-		HMPREF1058_RS12785	0.82	-1.1
33,757	-		HMPREF1058_RS12785	0.82	+0.0
33,759	-		HMPREF1058_RS12785	0.82	+0.3
33,779	-		HMPREF1058_RS12785	0.83	-0.3
33,784	-		HMPREF1058_RS12785	0.83	+0.3
33,784	-		HMPREF1058_RS12785	0.83	+0.1
33,784	-		HMPREF1058_RS12785	0.83	+0.0
33,785	+		HMPREF1058_RS12785	0.83	-0.1
33,785	+		HMPREF1058_RS12785	0.83	-0.1
33,785	+		HMPREF1058_RS12785	0.83	-0.4
33,785	+		HMPREF1058_RS12785	0.83	-1.1
33,785	+		HMPREF1058_RS12785	0.83	+1.3
33,786	-		HMPREF1058_RS12785	0.83	-0.5
33,786	-		HMPREF1058_RS12785	0.83	-0.4
33,823	+		HMPREF1058_RS12785	0.85	-0.8
33,864	-		HMPREF1058_RS12785	0.88	+0.2
33,901	-		HMPREF1058_RS12785	0.90	+1.2
33,916	+				-0.6
33,916	+				+0.2
33,918	+				-2.2
33,923	-				+2.1
33,923	-				-2.5
33,928	+				-0.6
34,003	-				-0.8
34,057	+				+0.5
34,151	+				-2.0
34,282	+				-0.5
34,282	+				+0.7
34,309	-				-0.8
34,310	+				-2.4
34,311	-				-1.0
34,311	-				-2.5
34,316	-				-0.4
34,411	+		HMPREF1058_RS12780	0.10	-1.7
34,411	+		HMPREF1058_RS12780	0.10	-2.1
34,411	+		HMPREF1058_RS12780	0.10	-1.7
34,411	+				-1.0
34,411	+		HMPREF1058_RS12780	0.10	-1.0
34,412	-		HMPREF1058_RS12780	0.11	-1.8
34,429	-		HMPREF1058_RS12780	0.12	-1.0
34,623	-		HMPREF1058_RS12780	0.30	-1.0
34,623	-		HMPREF1058_RS12780	0.30	-1.9
34,625	+		HMPREF1058_RS12780	0.31	-3.6
34,632	-		HMPREF1058_RS12780	0.31	-2.1
34,657	-		HMPREF1058_RS12780	0.34	-2.9
34,672	+		HMPREF1058_RS12780	0.35	-0.3
34,727	+		HMPREF1058_RS12780	0.40	-2.6
34,727	+		HMPREF1058_RS12780	0.40	-1.3
34,748	+		HMPREF1058_RS12780	0.42	-1.9
34,884	+		HMPREF1058_RS12780	0.55	-1.6
34,983	-		HMPREF1058_RS12780	0.64	-3.8
35,017	-		HMPREF1058_RS12780	0.67	+0.7
35,056	+		HMPREF1058_RS12780	0.71	-0.2
35,057	-		HMPREF1058_RS12780	0.71	-2.1
35,184	-		HMPREF1058_RS12780	0.83	-2.1
35,208	+		HMPREF1058_RS12780	0.85	-0.3
35,209	-		HMPREF1058_RS12780	0.85	-0.7
35,293	+				-1.8
35,295	+				-0.8
35,332	+				+1.7
35,333	-				-2.7
35,333	-				-1.9
35,372	-				-0.3
35,394	-				+1.5
35,418	+		HMPREF1058_RS12775	0.15	-0.2
35,477	+		HMPREF1058_RS12775	0.32	+0.1
35,478	-		HMPREF1058_RS12775	0.33	-1.0
35,585	+		HMPREF1058_RS12775	0.65	-1.1
35,671	+				-2.8
35,671	+				-0.9
35,671	+				-0.3
35,672	-				+0.5
35,676	-				+0.2
35,700	-				-2.8
35,722	+				-0.2
35,741	-				-1.0
35,781	-				+0.4
35,785	-				-1.6
35,788	+				-2.2
35,789	-				-1.1
35,812	-				+1.7
35,822	-				-1.3
35,832	+				+2.3
36,050	-		HMPREF1058_RS12770	0.29	-0.6
36,069	+		HMPREF1058_RS12770	0.31	-3.0
36,100	+		HMPREF1058_RS12770	0.35	-0.8
36,156	+		HMPREF1058_RS12770	0.42	-1.5
36,166	+		HMPREF1058_RS12770	0.43	+1.3
36,189	+		HMPREF1058_RS12770	0.45	-1.6
36,189	+		HMPREF1058_RS12770	0.45	-0.2
36,190	-		HMPREF1058_RS12770	0.46	+1.3
36,190	-		HMPREF1058_RS12770	0.46	+0.0
36,190	-		HMPREF1058_RS12770	0.46	-0.8
36,253	-		HMPREF1058_RS12770	0.53	-0.8
36,309	+		HMPREF1058_RS12770	0.60	-3.4
36,316	+		HMPREF1058_RS12770	0.60	-0.0