Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12755 and HMPREF1058_RS12750 are separated by 77 nucleotides
HMPREF1058_RS12755: HMPREF1058_RS12755 - hypothetical protein, at 38,292 to 41,141
_RS12755
HMPREF1058_RS12750: HMPREF1058_RS12750 - helix-turn-helix transcriptional regulator, at 41,219 to 41,707
_RS12750
Position (kb) 41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 40.222 kb on + strand, within HMPREF1058_RS12755 at 40.222 kb on + strand, within HMPREF1058_RS12755 at 40.222 kb on + strand, within HMPREF1058_RS12755 at 40.223 kb on - strand, within HMPREF1058_RS12755 at 40.223 kb on - strand, within HMPREF1058_RS12755 at 40.230 kb on - strand, within HMPREF1058_RS12755 at 40.256 kb on + strand, within HMPREF1058_RS12755 at 40.257 kb on - strand, within HMPREF1058_RS12755 at 40.303 kb on + strand, within HMPREF1058_RS12755 at 40.337 kb on - strand, within HMPREF1058_RS12755 at 40.388 kb on + strand, within HMPREF1058_RS12755 at 40.389 kb on + strand, within HMPREF1058_RS12755 at 40.480 kb on + strand, within HMPREF1058_RS12755 at 40.481 kb on - strand, within HMPREF1058_RS12755 at 40.481 kb on - strand, within HMPREF1058_RS12755 at 40.488 kb on - strand, within HMPREF1058_RS12755 at 40.494 kb on - strand, within HMPREF1058_RS12755 at 40.494 kb on - strand, within HMPREF1058_RS12755 at 40.575 kb on - strand, within HMPREF1058_RS12755 at 40.603 kb on - strand, within HMPREF1058_RS12755 at 40.623 kb on + strand, within HMPREF1058_RS12755 at 40.688 kb on - strand, within HMPREF1058_RS12755 at 40.772 kb on - strand, within HMPREF1058_RS12755 at 40.859 kb on + strand at 40.956 kb on - strand at 41.059 kb on + strand at 41.216 kb on + strand at 41.220 kb on + strand at 41.463 kb on + strand, within HMPREF1058_RS12750 at 41.526 kb on - strand, within HMPREF1058_RS12750 at 41.552 kb on + strand, within HMPREF1058_RS12750 at 41.553 kb on - strand, within HMPREF1058_RS12750 at 41.555 kb on - strand, within HMPREF1058_RS12750 at 41.560 kb on + strand, within HMPREF1058_RS12750 at 41.561 kb on - strand, within HMPREF1058_RS12750 at 41.561 kb on - strand, within HMPREF1058_RS12750 at 41.561 kb on - strand, within HMPREF1058_RS12750 at 41.562 kb on + strand, within HMPREF1058_RS12750 at 41.563 kb on - strand, within HMPREF1058_RS12750 at 41.563 kb on - strand, within HMPREF1058_RS12750 at 41.564 kb on + strand, within HMPREF1058_RS12750 at 41.714 kb on + strand at 41.715 kb on - strand at 41.715 kb on - strand at 41.734 kb on - strand at 41.734 kb on - strand at 41.734 kb on - strand at 41.755 kb on - strand at 41.756 kb on + strand at 41.763 kb on + strand at 41.765 kb on + strand at 41.765 kb on + strand at 41.766 kb on - strand at 41.808 kb on - strand at 41.838 kb on + strand at 41.885 kb on - strand at 42.001 kb on + strand at 42.002 kb on - strand at 42.003 kb on + strand at 42.004 kb on - strand at 42.005 kb on + strand at 42.062 kb on + strand at 42.064 kb on + strand at 42.164 kb on + strand at 42.204 kb on + strand at 42.210 kb on + strand at 42.211 kb on - strand at 42.211 kb on - strand at 42.229 kb on + strand at 42.229 kb on + strand at 42.240 kb on + strand at 42.414 kb on - strand at 42.469 kb on - strand at 42.534 kb on + strand at 42.534 kb on + strand at 42.534 kb on + strand at 42.535 kb on - strand at 42.550 kb on + strand at 42.550 kb on + strand at 42.557 kb on + strand at 42.557 kb on + strand at 42.558 kb on - strand at 42.559 kb on + strand at 42.559 kb on + strand at 42.591 kb on + strand at 42.591 kb on + strand at 42.592 kb on - strand at 42.593 kb on + strand at 42.593 kb on + strand at 42.594 kb on - strand at 42.594 kb on - strand at 42.594 kb on - strand at 42.625 kb on + strand at 42.626 kb on - strand at 42.638 kb on + strand at 42.639 kb on - strand at 42.663 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 40,222 + HMPREF1058_RS12755 0.68 +0.1 40,222 + HMPREF1058_RS12755 0.68 -1.7 40,222 + HMPREF1058_RS12755 0.68 +0.9 40,223 - HMPREF1058_RS12755 0.68 -0.5 40,223 - HMPREF1058_RS12755 0.68 -1.3 40,230 - HMPREF1058_RS12755 0.68 +0.4 40,256 + HMPREF1058_RS12755 0.69 -1.7 40,257 - HMPREF1058_RS12755 0.69 +0.5 40,303 + HMPREF1058_RS12755 0.71 +0.6 40,337 - HMPREF1058_RS12755 0.72 +2.5 40,388 + HMPREF1058_RS12755 0.74 -1.1 40,389 + HMPREF1058_RS12755 0.74 -0.8 40,480 + HMPREF1058_RS12755 0.77 -1.1 40,481 - HMPREF1058_RS12755 0.77 +0.2 40,481 - HMPREF1058_RS12755 0.77 -2.9 40,488 - HMPREF1058_RS12755 0.77 -0.3 40,494 - HMPREF1058_RS12755 0.77 -0.9 40,494 - HMPREF1058_RS12755 0.77 -1.6 40,575 - HMPREF1058_RS12755 0.80 +0.6 40,603 - HMPREF1058_RS12755 0.81 +0.1 40,623 + HMPREF1058_RS12755 0.82 -1.7 40,688 - HMPREF1058_RS12755 0.84 +0.5 40,772 - HMPREF1058_RS12755 0.87 -2.4 40,859 + -0.6 40,956 - -0.5 41,059 + +0.7 41,216 + -1.7 41,220 + +0.4 41,463 + HMPREF1058_RS12750 0.50 -1.2 41,526 - HMPREF1058_RS12750 0.63 -3.4 41,552 + HMPREF1058_RS12750 0.68 -1.5 41,553 - HMPREF1058_RS12750 0.68 +1.1 41,555 - HMPREF1058_RS12750 0.69 -1.4 41,560 + HMPREF1058_RS12750 0.70 -1.8 41,561 - HMPREF1058_RS12750 0.70 -2.1 41,561 - HMPREF1058_RS12750 0.70 -1.3 41,561 - HMPREF1058_RS12750 0.70 -1.4 41,562 + HMPREF1058_RS12750 0.70 -0.2 41,563 - HMPREF1058_RS12750 0.70 -1.3 41,563 - HMPREF1058_RS12750 0.70 +0.3 41,564 + HMPREF1058_RS12750 0.71 +0.0 41,714 + -1.3 41,715 - -1.9 41,715 - +0.0 41,734 - -0.8 41,734 - -0.8 41,734 - -0.8 41,755 - +1.3 41,756 + +3.5 41,763 + +0.9 41,765 + -0.0 41,765 + +0.3 41,766 - -1.7 41,808 - +1.7 41,838 + -1.0 41,885 - -0.5 42,001 + +1.5 42,002 - +1.1 42,003 + +0.4 42,004 - -0.5 42,005 + -0.3 42,062 + -0.7 42,064 + +1.2 42,164 + -0.2 42,204 + -0.6 42,210 + +0.3 42,211 - -1.2 42,211 - +0.1 42,229 + -1.1 42,229 + -0.7 42,240 + -0.6 42,414 - -1.1 42,469 - -0.4 42,534 + -1.6 42,534 + +0.1 42,534 + -1.1 42,535 - -0.3 42,550 + +1.3 42,550 + -0.4 42,557 + -2.1 42,557 + +1.7 42,558 - -1.2 42,559 + -0.7 42,559 + -0.3 42,591 + -2.5 42,591 + -0.3 42,592 - +1.8 42,593 + -0.4 42,593 + -0.5 42,594 - -1.9 42,594 - -1.6 42,594 - -0.3 42,625 + -2.0 42,626 - -0.4 42,638 + +0.0 42,639 - +0.9 42,663 + +0.6
Or see this region's nucleotide sequence