Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12175 and HMPREF1058_RS12170 are separated by 213 nucleotides HMPREF1058_RS12170 and HMPREF1058_RS12165 are separated by 20 nucleotides
HMPREF1058_RS12175: HMPREF1058_RS12175 - MFS transporter AraJ, at 184,119 to 185,279
_RS12175
HMPREF1058_RS12170: HMPREF1058_RS12170 - hypothetical protein, at 185,493 to 185,741
_RS12170
HMPREF1058_RS12165: HMPREF1058_RS12165 - radical SAM protein, at 185,762 to 186,832
_RS12165
Position (kb) 185
186 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 184.571 kb on + strand, within HMPREF1058_RS12175 at 184.571 kb on + strand, within HMPREF1058_RS12175 at 184.618 kb on + strand, within HMPREF1058_RS12175 at 184.619 kb on - strand, within HMPREF1058_RS12175 at 184.619 kb on - strand, within HMPREF1058_RS12175 at 184.619 kb on - strand, within HMPREF1058_RS12175 at 184.655 kb on + strand, within HMPREF1058_RS12175 at 184.721 kb on + strand, within HMPREF1058_RS12175 at 184.763 kb on - strand, within HMPREF1058_RS12175 at 184.794 kb on - strand, within HMPREF1058_RS12175 at 184.821 kb on + strand, within HMPREF1058_RS12175 at 184.821 kb on + strand, within HMPREF1058_RS12175 at 184.823 kb on + strand, within HMPREF1058_RS12175 at 184.823 kb on + strand, within HMPREF1058_RS12175 at 184.823 kb on + strand, within HMPREF1058_RS12175 at 184.824 kb on - strand, within HMPREF1058_RS12175 at 184.824 kb on - strand, within HMPREF1058_RS12175 at 185.045 kb on + strand, within HMPREF1058_RS12175 at 185.048 kb on - strand, within HMPREF1058_RS12175 at 185.052 kb on - strand, within HMPREF1058_RS12175 at 185.072 kb on + strand, within HMPREF1058_RS12175 at 185.072 kb on + strand, within HMPREF1058_RS12175 at 185.133 kb on + strand, within HMPREF1058_RS12175 at 185.172 kb on - strand at 185.175 kb on + strand at 185.176 kb on - strand at 185.176 kb on - strand at 185.177 kb on + strand at 185.217 kb on + strand at 185.322 kb on + strand at 185.383 kb on - strand at 185.401 kb on + strand at 185.436 kb on - strand at 185.659 kb on - strand, within HMPREF1058_RS12170 at 185.660 kb on + strand, within HMPREF1058_RS12170 at 185.661 kb on - strand, within HMPREF1058_RS12170 at 185.763 kb on + strand at 185.769 kb on - strand at 185.799 kb on + strand at 185.840 kb on + strand at 185.842 kb on + strand at 185.843 kb on - strand at 185.867 kb on - strand at 185.874 kb on + strand, within HMPREF1058_RS12165 at 185.878 kb on + strand, within HMPREF1058_RS12165 at 185.878 kb on + strand, within HMPREF1058_RS12165 at 185.879 kb on - strand, within HMPREF1058_RS12165 at 185.906 kb on - strand, within HMPREF1058_RS12165 at 185.906 kb on - strand, within HMPREF1058_RS12165 at 185.906 kb on - strand, within HMPREF1058_RS12165 at 185.968 kb on + strand, within HMPREF1058_RS12165 at 185.968 kb on + strand, within HMPREF1058_RS12165 at 185.983 kb on + strand, within HMPREF1058_RS12165 at 185.998 kb on - strand, within HMPREF1058_RS12165 at 186.019 kb on - strand, within HMPREF1058_RS12165 at 186.021 kb on - strand, within HMPREF1058_RS12165 at 186.023 kb on - strand, within HMPREF1058_RS12165 at 186.023 kb on - strand, within HMPREF1058_RS12165 at 186.024 kb on + strand, within HMPREF1058_RS12165 at 186.024 kb on + strand, within HMPREF1058_RS12165 at 186.025 kb on - strand, within HMPREF1058_RS12165 at 186.025 kb on - strand at 186.072 kb on + strand, within HMPREF1058_RS12165 at 186.073 kb on - strand, within HMPREF1058_RS12165 at 186.086 kb on - strand at 186.104 kb on - strand, within HMPREF1058_RS12165 at 186.104 kb on - strand, within HMPREF1058_RS12165 at 186.216 kb on + strand, within HMPREF1058_RS12165 at 186.219 kb on + strand, within HMPREF1058_RS12165 at 186.219 kb on + strand, within HMPREF1058_RS12165 at 186.219 kb on + strand, within HMPREF1058_RS12165 at 186.227 kb on - strand, within HMPREF1058_RS12165 at 186.254 kb on + strand, within HMPREF1058_RS12165 at 186.319 kb on + strand, within HMPREF1058_RS12165 at 186.375 kb on + strand, within HMPREF1058_RS12165 at 186.438 kb on + strand, within HMPREF1058_RS12165 at 186.510 kb on + strand, within HMPREF1058_RS12165 at 186.523 kb on + strand, within HMPREF1058_RS12165 at 186.533 kb on - strand, within HMPREF1058_RS12165 at 186.568 kb on + strand at 186.569 kb on - strand, within HMPREF1058_RS12165 at 186.675 kb on - strand, within HMPREF1058_RS12165 at 186.706 kb on + strand, within HMPREF1058_RS12165 at 186.707 kb on - strand, within HMPREF1058_RS12165
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 184,571 + HMPREF1058_RS12175 0.39 -0.2 184,571 + HMPREF1058_RS12175 0.39 -0.3 184,618 + HMPREF1058_RS12175 0.43 -2.0 184,619 - HMPREF1058_RS12175 0.43 +3.1 184,619 - HMPREF1058_RS12175 0.43 +1.1 184,619 - HMPREF1058_RS12175 0.43 +3.3 184,655 + HMPREF1058_RS12175 0.46 -0.3 184,721 + HMPREF1058_RS12175 0.52 -0.6 184,763 - HMPREF1058_RS12175 0.55 +0.1 184,794 - HMPREF1058_RS12175 0.58 +0.2 184,821 + HMPREF1058_RS12175 0.60 -0.8 184,821 + HMPREF1058_RS12175 0.60 +1.1 184,823 + HMPREF1058_RS12175 0.61 +3.3 184,823 + HMPREF1058_RS12175 0.61 +0.6 184,823 + HMPREF1058_RS12175 0.61 -1.3 184,824 - HMPREF1058_RS12175 0.61 -2.5 184,824 - HMPREF1058_RS12175 0.61 +0.4 185,045 + HMPREF1058_RS12175 0.80 -0.1 185,048 - HMPREF1058_RS12175 0.80 -0.1 185,052 - HMPREF1058_RS12175 0.80 +0.1 185,072 + HMPREF1058_RS12175 0.82 +0.6 185,072 + HMPREF1058_RS12175 0.82 +0.1 185,133 + HMPREF1058_RS12175 0.87 +1.2 185,172 - -1.0 185,175 + -1.0 185,176 - -0.5 185,176 - -0.6 185,177 + -0.0 185,217 + -2.1 185,322 + -1.7 185,383 - -0.0 185,401 + +1.6 185,436 - -1.5 185,659 - HMPREF1058_RS12170 0.67 -3.4 185,660 + HMPREF1058_RS12170 0.67 -0.9 185,661 - HMPREF1058_RS12170 0.67 -2.6 185,763 + -0.7 185,769 - -0.1 185,799 + -1.3 185,840 + -0.9 185,842 + -0.4 185,843 - +0.0 185,867 - -0.3 185,874 + HMPREF1058_RS12165 0.10 +0.7 185,878 + HMPREF1058_RS12165 0.11 +0.3 185,878 + HMPREF1058_RS12165 0.11 -0.3 185,879 - HMPREF1058_RS12165 0.11 -0.6 185,906 - HMPREF1058_RS12165 0.13 -0.1 185,906 - HMPREF1058_RS12165 0.13 -0.6 185,906 - HMPREF1058_RS12165 0.13 -1.5 185,968 + HMPREF1058_RS12165 0.19 +1.3 185,968 + HMPREF1058_RS12165 0.19 -0.1 185,983 + HMPREF1058_RS12165 0.21 -1.6 185,998 - HMPREF1058_RS12165 0.22 -0.7 186,019 - HMPREF1058_RS12165 0.24 -0.2 186,021 - HMPREF1058_RS12165 0.24 +0.5 186,023 - HMPREF1058_RS12165 0.24 -0.4 186,023 - HMPREF1058_RS12165 0.24 +0.2 186,024 + HMPREF1058_RS12165 0.24 -1.9 186,024 + HMPREF1058_RS12165 0.24 -2.0 186,025 - HMPREF1058_RS12165 0.25 -1.1 186,025 - -0.4 186,072 + HMPREF1058_RS12165 0.29 +1.0 186,073 - HMPREF1058_RS12165 0.29 +1.6 186,086 - +2.0 186,104 - HMPREF1058_RS12165 0.32 -0.5 186,104 - HMPREF1058_RS12165 0.32 -0.9 186,216 + HMPREF1058_RS12165 0.42 -0.6 186,219 + HMPREF1058_RS12165 0.43 -0.4 186,219 + HMPREF1058_RS12165 0.43 +0.8 186,219 + HMPREF1058_RS12165 0.43 +1.0 186,227 - HMPREF1058_RS12165 0.43 +0.3 186,254 + HMPREF1058_RS12165 0.46 -2.4 186,319 + HMPREF1058_RS12165 0.52 -2.2 186,375 + HMPREF1058_RS12165 0.57 -0.1 186,438 + HMPREF1058_RS12165 0.63 +0.2 186,510 + HMPREF1058_RS12165 0.70 +0.4 186,523 + HMPREF1058_RS12165 0.71 -0.2 186,533 - HMPREF1058_RS12165 0.72 -2.3 186,568 + +0.0 186,569 - HMPREF1058_RS12165 0.75 -0.8 186,675 - HMPREF1058_RS12165 0.85 -1.1 186,706 + HMPREF1058_RS12165 0.88 +0.3 186,707 - HMPREF1058_RS12165 0.88 -3.6
Or see this region's nucleotide sequence