Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12080 and HMPREF1058_RS12075 are separated by 22 nucleotides HMPREF1058_RS12075 and HMPREF1058_RS12070 are separated by 116 nucleotides HMPREF1058_RS12070 and HMPREF1058_RS12065 are separated by 6 nucleotides HMPREF1058_RS12065 and HMPREF1058_RS12060 are separated by 199 nucleotides
HMPREF1058_RS12080: HMPREF1058_RS12080 - HlyC/CorC family transporter, at 208,169 to 209,455
_RS12080
HMPREF1058_RS12075: HMPREF1058_RS12075 - hypothetical protein, at 209,478 to 209,861
_RS12075
HMPREF1058_RS12070: HMPREF1058_RS12070 - Lrp/AsnC ligand binding domain-containing protein, at 209,978 to 210,436
_RS12070
HMPREF1058_RS12065: HMPREF1058_RS12065 - DUF4491 family protein, at 210,443 to 210,757
_RS12065
HMPREF1058_RS12060: HMPREF1058_RS12060 - outer membrane beta-barrel protein, at 210,957 to 213,236
_RS12060
Position (kb) 210
211 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 209.472 kb on + strand at 209.472 kb on + strand at 209.477 kb on + strand at 209.477 kb on + strand at 209.586 kb on + strand, within HMPREF1058_RS12075 at 209.610 kb on + strand, within HMPREF1058_RS12075 at 209.610 kb on + strand, within HMPREF1058_RS12075 at 209.611 kb on - strand, within HMPREF1058_RS12075 at 209.631 kb on + strand, within HMPREF1058_RS12075 at 209.632 kb on - strand, within HMPREF1058_RS12075 at 209.633 kb on + strand, within HMPREF1058_RS12075 at 209.633 kb on + strand, within HMPREF1058_RS12075 at 209.635 kb on + strand, within HMPREF1058_RS12075 at 209.635 kb on + strand, within HMPREF1058_RS12075 at 209.636 kb on - strand, within HMPREF1058_RS12075 at 209.659 kb on - strand, within HMPREF1058_RS12075 at 209.795 kb on + strand, within HMPREF1058_RS12075 at 209.796 kb on - strand, within HMPREF1058_RS12075 at 209.802 kb on - strand, within HMPREF1058_RS12075 at 209.912 kb on + strand at 209.931 kb on + strand at 210.019 kb on + strand at 210.019 kb on + strand at 210.019 kb on + strand at 210.020 kb on - strand at 210.124 kb on + strand, within HMPREF1058_RS12070 at 210.170 kb on - strand, within HMPREF1058_RS12070 at 210.178 kb on + strand, within HMPREF1058_RS12070 at 210.182 kb on + strand, within HMPREF1058_RS12070 at 210.183 kb on - strand, within HMPREF1058_RS12070 at 210.187 kb on - strand, within HMPREF1058_RS12070 at 210.226 kb on - strand, within HMPREF1058_RS12070 at 210.285 kb on - strand, within HMPREF1058_RS12070 at 210.286 kb on + strand, within HMPREF1058_RS12070 at 210.494 kb on - strand, within HMPREF1058_RS12065 at 210.763 kb on - strand at 210.839 kb on + strand at 210.840 kb on - strand at 210.910 kb on - strand at 210.998 kb on + strand at 211.028 kb on + strand at 211.094 kb on - strand at 211.096 kb on + strand at 211.096 kb on + strand at 211.145 kb on - strand at 211.145 kb on - strand at 211.191 kb on + strand, within HMPREF1058_RS12060 at 211.244 kb on - strand, within HMPREF1058_RS12060 at 211.290 kb on - strand, within HMPREF1058_RS12060 at 211.304 kb on + strand, within HMPREF1058_RS12060 at 211.313 kb on + strand, within HMPREF1058_RS12060 at 211.358 kb on + strand, within HMPREF1058_RS12060 at 211.363 kb on + strand, within HMPREF1058_RS12060 at 211.370 kb on + strand, within HMPREF1058_RS12060 at 211.371 kb on - strand, within HMPREF1058_RS12060 at 211.380 kb on + strand, within HMPREF1058_RS12060 at 211.406 kb on - strand, within HMPREF1058_RS12060 at 211.406 kb on - strand, within HMPREF1058_RS12060 at 211.406 kb on - strand, within HMPREF1058_RS12060 at 211.469 kb on - strand, within HMPREF1058_RS12060 at 211.470 kb on + strand, within HMPREF1058_RS12060 at 211.470 kb on + strand, within HMPREF1058_RS12060 at 211.470 kb on + strand, within HMPREF1058_RS12060 at 211.470 kb on + strand, within HMPREF1058_RS12060 at 211.470 kb on + strand, within HMPREF1058_RS12060 at 211.470 kb on + strand, within HMPREF1058_RS12060 at 211.470 kb on + strand at 211.471 kb on - strand, within HMPREF1058_RS12060 at 211.471 kb on - strand at 211.471 kb on - strand, within HMPREF1058_RS12060 at 211.471 kb on - strand, within HMPREF1058_RS12060 at 211.472 kb on + strand, within HMPREF1058_RS12060 at 211.543 kb on + strand, within HMPREF1058_RS12060 at 211.561 kb on + strand, within HMPREF1058_RS12060 at 211.561 kb on + strand, within HMPREF1058_RS12060 at 211.561 kb on + strand, within HMPREF1058_RS12060 at 211.562 kb on - strand, within HMPREF1058_RS12060 at 211.565 kb on + strand, within HMPREF1058_RS12060 at 211.566 kb on - strand, within HMPREF1058_RS12060 at 211.566 kb on - strand, within HMPREF1058_RS12060 at 211.566 kb on - strand, within HMPREF1058_RS12060 at 211.584 kb on - strand, within HMPREF1058_RS12060 at 211.664 kb on - strand, within HMPREF1058_RS12060 at 211.668 kb on + strand, within HMPREF1058_RS12060 at 211.669 kb on - strand, within HMPREF1058_RS12060 at 211.669 kb on - strand, within HMPREF1058_RS12060 at 211.697 kb on - strand, within HMPREF1058_RS12060 at 211.716 kb on + strand, within HMPREF1058_RS12060 at 211.717 kb on - strand, within HMPREF1058_RS12060 at 211.717 kb on - strand, within HMPREF1058_RS12060 at 211.717 kb on - strand, within HMPREF1058_RS12060 at 211.732 kb on + strand, within HMPREF1058_RS12060
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 209,472 + -0.7 209,472 + -1.9 209,477 + -0.8 209,477 + -0.6 209,586 + HMPREF1058_RS12075 0.28 +0.4 209,610 + HMPREF1058_RS12075 0.34 +0.6 209,610 + HMPREF1058_RS12075 0.34 +1.1 209,611 - HMPREF1058_RS12075 0.35 +0.8 209,631 + HMPREF1058_RS12075 0.40 +0.3 209,632 - HMPREF1058_RS12075 0.40 -2.3 209,633 + HMPREF1058_RS12075 0.40 +2.0 209,633 + HMPREF1058_RS12075 0.40 -1.1 209,635 + HMPREF1058_RS12075 0.41 +0.3 209,635 + HMPREF1058_RS12075 0.41 -1.5 209,636 - HMPREF1058_RS12075 0.41 -0.1 209,659 - HMPREF1058_RS12075 0.47 -0.7 209,795 + HMPREF1058_RS12075 0.83 +0.6 209,796 - HMPREF1058_RS12075 0.83 +1.0 209,802 - HMPREF1058_RS12075 0.84 -0.2 209,912 + +0.2 209,931 + +0.6 210,019 + -0.5 210,019 + -2.6 210,019 + +0.0 210,020 - -1.8 210,124 + HMPREF1058_RS12070 0.32 -2.1 210,170 - HMPREF1058_RS12070 0.42 -3.3 210,178 + HMPREF1058_RS12070 0.44 -0.7 210,182 + HMPREF1058_RS12070 0.44 +0.0 210,183 - HMPREF1058_RS12070 0.45 +0.6 210,187 - HMPREF1058_RS12070 0.46 -0.7 210,226 - HMPREF1058_RS12070 0.54 -2.0 210,285 - HMPREF1058_RS12070 0.67 -1.9 210,286 + HMPREF1058_RS12070 0.67 -1.4 210,494 - HMPREF1058_RS12065 0.16 -1.3 210,763 - +1.6 210,839 + +0.7 210,840 - -0.4 210,910 - -1.5 210,998 + -0.1 211,028 + +1.0 211,094 - -0.9 211,096 + +1.0 211,096 + -0.5 211,145 - -2.3 211,145 - +0.1 211,191 + HMPREF1058_RS12060 0.10 -1.3 211,244 - HMPREF1058_RS12060 0.13 -1.2 211,290 - HMPREF1058_RS12060 0.15 -0.1 211,304 + HMPREF1058_RS12060 0.15 -0.4 211,313 + HMPREF1058_RS12060 0.16 -0.0 211,358 + HMPREF1058_RS12060 0.18 -1.0 211,363 + HMPREF1058_RS12060 0.18 -0.6 211,370 + HMPREF1058_RS12060 0.18 +1.9 211,371 - HMPREF1058_RS12060 0.18 -0.4 211,380 + HMPREF1058_RS12060 0.19 -4.1 211,406 - HMPREF1058_RS12060 0.20 -0.3 211,406 - HMPREF1058_RS12060 0.20 +1.3 211,406 - HMPREF1058_RS12060 0.20 -1.4 211,469 - HMPREF1058_RS12060 0.22 -1.2 211,470 + HMPREF1058_RS12060 0.23 -1.1 211,470 + HMPREF1058_RS12060 0.23 +0.3 211,470 + HMPREF1058_RS12060 0.23 +0.2 211,470 + HMPREF1058_RS12060 0.23 +0.4 211,470 + HMPREF1058_RS12060 0.23 +0.3 211,470 + HMPREF1058_RS12060 0.23 -1.9 211,470 + +0.3 211,471 - HMPREF1058_RS12060 0.23 +0.4 211,471 - -0.8 211,471 - HMPREF1058_RS12060 0.23 -0.5 211,471 - HMPREF1058_RS12060 0.23 -0.7 211,472 + HMPREF1058_RS12060 0.23 -2.5 211,543 + HMPREF1058_RS12060 0.26 +0.0 211,561 + HMPREF1058_RS12060 0.26 +0.0 211,561 + HMPREF1058_RS12060 0.26 -0.4 211,561 + HMPREF1058_RS12060 0.26 -1.3 211,562 - HMPREF1058_RS12060 0.27 -0.1 211,565 + HMPREF1058_RS12060 0.27 +2.0 211,566 - HMPREF1058_RS12060 0.27 -1.5 211,566 - HMPREF1058_RS12060 0.27 +0.5 211,566 - HMPREF1058_RS12060 0.27 -0.9 211,584 - HMPREF1058_RS12060 0.28 -1.1 211,664 - HMPREF1058_RS12060 0.31 +0.3 211,668 + HMPREF1058_RS12060 0.31 +0.6 211,669 - HMPREF1058_RS12060 0.31 +0.5 211,669 - HMPREF1058_RS12060 0.31 +1.0 211,697 - HMPREF1058_RS12060 0.32 -1.7 211,716 + HMPREF1058_RS12060 0.33 +0.6 211,717 - HMPREF1058_RS12060 0.33 +0.6 211,717 - HMPREF1058_RS12060 0.33 +1.6 211,717 - HMPREF1058_RS12060 0.33 +0.2 211,732 + HMPREF1058_RS12060 0.34 +0.7
Or see this region's nucleotide sequence