Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11955 and HMPREF1058_RS11950 are separated by 27 nucleotides HMPREF1058_RS11950 and HMPREF1058_RS11945 overlap by 1 nucleotides
HMPREF1058_RS11955: HMPREF1058_RS11955 - calcium-translocating P-type ATPase, PMCA-type, at 236,868 to 239,498
_RS11955
HMPREF1058_RS11950: HMPREF1058_RS11950 - HAD family phosphatase, at 239,526 to 240,140
_RS11950
HMPREF1058_RS11945: HMPREF1058_RS11945 - bifunctional riboflavin kinase/FAD synthetase, at 240,140 to 241,060
_RS11945
Position (kb) 239
240
241 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 239.509 kb on - strand at 239.517 kb on + strand at 239.517 kb on + strand at 239.518 kb on - strand at 239.535 kb on - strand at 239.631 kb on - strand, within HMPREF1058_RS11950 at 239.768 kb on + strand, within HMPREF1058_RS11950 at 239.785 kb on + strand, within HMPREF1058_RS11950 at 239.815 kb on + strand, within HMPREF1058_RS11950 at 239.815 kb on + strand, within HMPREF1058_RS11950 at 239.816 kb on - strand, within HMPREF1058_RS11950 at 239.816 kb on - strand, within HMPREF1058_RS11950 at 239.838 kb on + strand, within HMPREF1058_RS11950 at 239.838 kb on + strand, within HMPREF1058_RS11950 at 239.839 kb on - strand, within HMPREF1058_RS11950 at 239.839 kb on - strand, within HMPREF1058_RS11950 at 239.840 kb on + strand, within HMPREF1058_RS11950 at 239.841 kb on - strand, within HMPREF1058_RS11950 at 239.858 kb on + strand, within HMPREF1058_RS11950 at 239.858 kb on + strand, within HMPREF1058_RS11950 at 239.858 kb on + strand, within HMPREF1058_RS11950 at 240.096 kb on + strand at 241.058 kb on + strand at 241.108 kb on - strand at 241.121 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 239,509 - -0.6 239,517 + -2.1 239,517 + +0.1 239,518 - +0.9 239,535 - -0.6 239,631 - HMPREF1058_RS11950 0.17 -0.2 239,768 + HMPREF1058_RS11950 0.39 +1.3 239,785 + HMPREF1058_RS11950 0.42 -4.3 239,815 + HMPREF1058_RS11950 0.47 -0.6 239,815 + HMPREF1058_RS11950 0.47 -0.5 239,816 - HMPREF1058_RS11950 0.47 -0.3 239,816 - HMPREF1058_RS11950 0.47 -3.5 239,838 + HMPREF1058_RS11950 0.51 -1.7 239,838 + HMPREF1058_RS11950 0.51 -1.6 239,839 - HMPREF1058_RS11950 0.51 +0.7 239,839 - HMPREF1058_RS11950 0.51 -0.7 239,840 + HMPREF1058_RS11950 0.51 -1.3 239,841 - HMPREF1058_RS11950 0.51 +0.0 239,858 + HMPREF1058_RS11950 0.54 -1.6 239,858 + HMPREF1058_RS11950 0.54 -3.0 239,858 + HMPREF1058_RS11950 0.54 +0.7 240,096 + +0.1 241,058 + +2.1 241,108 - +3.1 241,121 + +0.8
Or see this region's nucleotide sequence