Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11895 and HMPREF1058_RS11890 are separated by 3 nucleotides HMPREF1058_RS11890 and HMPREF1058_RS11885 are separated by 126 nucleotides
HMPREF1058_RS11895: HMPREF1058_RS11895 - lipopolysaccharide biosynthesis protein, at 250,904 to 252,349
_RS11895
HMPREF1058_RS11890: HMPREF1058_RS11890 - Holliday junction branch migration DNA helicase RuvB, at 252,353 to 253,381
_RS11890
HMPREF1058_RS11885: HMPREF1058_RS11885 - site-specific integrase, at 253,508 to 254,626
_RS11885
Position (kb) 252
253
254 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 252.385 kb on - strand at 252.407 kb on - strand at 252.407 kb on - strand at 252.450 kb on - strand at 252.564 kb on - strand, within HMPREF1058_RS11890 at 252.565 kb on + strand, within HMPREF1058_RS11890 at 252.566 kb on - strand, within HMPREF1058_RS11890 at 252.569 kb on - strand, within HMPREF1058_RS11890 at 252.569 kb on - strand, within HMPREF1058_RS11890 at 252.571 kb on + strand, within HMPREF1058_RS11890 at 252.590 kb on + strand, within HMPREF1058_RS11890 at 252.786 kb on - strand, within HMPREF1058_RS11890 at 252.787 kb on + strand, within HMPREF1058_RS11890 at 252.791 kb on - strand, within HMPREF1058_RS11890 at 252.818 kb on + strand, within HMPREF1058_RS11890 at 253.017 kb on - strand, within HMPREF1058_RS11890 at 253.038 kb on - strand, within HMPREF1058_RS11890 at 253.106 kb on - strand, within HMPREF1058_RS11890 at 253.166 kb on - strand, within HMPREF1058_RS11890 at 253.417 kb on - strand at 253.516 kb on + strand at 253.576 kb on + strand at 253.707 kb on + strand, within HMPREF1058_RS11885 at 253.718 kb on + strand, within HMPREF1058_RS11885 at 253.735 kb on - strand, within HMPREF1058_RS11885 at 253.791 kb on - strand, within HMPREF1058_RS11885 at 253.808 kb on + strand, within HMPREF1058_RS11885 at 253.808 kb on + strand, within HMPREF1058_RS11885 at 254.038 kb on + strand, within HMPREF1058_RS11885 at 254.148 kb on + strand, within HMPREF1058_RS11885 at 254.200 kb on - strand, within HMPREF1058_RS11885 at 254.216 kb on - strand, within HMPREF1058_RS11885 at 254.216 kb on - strand, within HMPREF1058_RS11885 at 254.216 kb on - strand, within HMPREF1058_RS11885 at 254.248 kb on + strand, within HMPREF1058_RS11885 at 254.249 kb on - strand, within HMPREF1058_RS11885 at 254.254 kb on - strand, within HMPREF1058_RS11885 at 254.338 kb on + strand, within HMPREF1058_RS11885 at 254.338 kb on + strand, within HMPREF1058_RS11885 at 254.339 kb on - strand, within HMPREF1058_RS11885
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 252,385 - -0.2 252,407 - +0.9 252,407 - -3.7 252,450 - +0.7 252,564 - HMPREF1058_RS11890 0.21 +0.4 252,565 + HMPREF1058_RS11890 0.21 -2.8 252,566 - HMPREF1058_RS11890 0.21 -0.8 252,569 - HMPREF1058_RS11890 0.21 +1.3 252,569 - HMPREF1058_RS11890 0.21 -1.0 252,571 + HMPREF1058_RS11890 0.21 -0.3 252,590 + HMPREF1058_RS11890 0.23 +0.3 252,786 - HMPREF1058_RS11890 0.42 -1.7 252,787 + HMPREF1058_RS11890 0.42 -1.1 252,791 - HMPREF1058_RS11890 0.43 +3.1 252,818 + HMPREF1058_RS11890 0.45 -1.8 253,017 - HMPREF1058_RS11890 0.65 -1.8 253,038 - HMPREF1058_RS11890 0.67 -0.7 253,106 - HMPREF1058_RS11890 0.73 +0.2 253,166 - HMPREF1058_RS11890 0.79 -0.3 253,417 - -1.0 253,516 + -0.3 253,576 + -0.7 253,707 + HMPREF1058_RS11885 0.18 +0.5 253,718 + HMPREF1058_RS11885 0.19 -0.8 253,735 - HMPREF1058_RS11885 0.20 -4.0 253,791 - HMPREF1058_RS11885 0.25 -1.5 253,808 + HMPREF1058_RS11885 0.27 -0.9 253,808 + HMPREF1058_RS11885 0.27 -0.9 254,038 + HMPREF1058_RS11885 0.47 +0.3 254,148 + HMPREF1058_RS11885 0.57 -0.5 254,200 - HMPREF1058_RS11885 0.62 -0.7 254,216 - HMPREF1058_RS11885 0.63 -0.2 254,216 - HMPREF1058_RS11885 0.63 -1.0 254,216 - HMPREF1058_RS11885 0.63 +0.0 254,248 + HMPREF1058_RS11885 0.66 -1.5 254,249 - HMPREF1058_RS11885 0.66 -0.7 254,254 - HMPREF1058_RS11885 0.67 -0.4 254,338 + HMPREF1058_RS11885 0.74 -2.9 254,338 + HMPREF1058_RS11885 0.74 -1.6 254,339 - HMPREF1058_RS11885 0.74 -1.2
Or see this region's nucleotide sequence