Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11500 and HMPREF1058_RS11495 are separated by 309 nucleotides HMPREF1058_RS11495 and HMPREF1058_RS11490 are separated by 201 nucleotides HMPREF1058_RS11490 and HMPREF1058_RS11485 are separated by 119 nucleotides
HMPREF1058_RS11500: HMPREF1058_RS11500 - DNA polymerase I, at 363,502 to 366,417
_RS11500
HMPREF1058_RS11495: HMPREF1058_RS11495 - DUF3836 domain-containing protein, at 366,727 to 367,113
_RS11495
HMPREF1058_RS11490: HMPREF1058_RS11490 - redox-regulated ATPase YchF, at 367,315 to 368,418
_RS11490
HMPREF1058_RS11485: HMPREF1058_RS11485 - ketopantoate reductase family protein, at 368,538 to 369,449
_RS11485
Position (kb) 367
368
369 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 366.357 kb on + strand at 366.422 kb on + strand at 366.423 kb on - strand at 366.427 kb on - strand at 366.436 kb on - strand at 366.478 kb on + strand at 366.492 kb on + strand at 366.534 kb on + strand at 366.534 kb on + strand at 366.562 kb on + strand at 366.571 kb on + strand at 366.712 kb on + strand at 366.713 kb on - strand at 366.715 kb on + strand at 366.717 kb on + strand at 366.717 kb on + strand at 366.718 kb on - strand at 366.773 kb on + strand, within HMPREF1058_RS11495 at 366.777 kb on + strand, within HMPREF1058_RS11495 at 366.778 kb on - strand, within HMPREF1058_RS11495 at 366.842 kb on + strand, within HMPREF1058_RS11495 at 366.843 kb on - strand, within HMPREF1058_RS11495 at 366.851 kb on + strand, within HMPREF1058_RS11495 at 366.895 kb on - strand, within HMPREF1058_RS11495 at 366.897 kb on + strand, within HMPREF1058_RS11495 at 366.898 kb on - strand, within HMPREF1058_RS11495 at 366.898 kb on - strand, within HMPREF1058_RS11495 at 366.901 kb on + strand, within HMPREF1058_RS11495 at 366.904 kb on - strand, within HMPREF1058_RS11495 at 366.916 kb on + strand, within HMPREF1058_RS11495 at 366.916 kb on + strand, within HMPREF1058_RS11495 at 366.942 kb on + strand, within HMPREF1058_RS11495 at 367.011 kb on + strand, within HMPREF1058_RS11495 at 367.011 kb on + strand, within HMPREF1058_RS11495 at 367.012 kb on - strand, within HMPREF1058_RS11495 at 367.015 kb on + strand at 367.016 kb on - strand, within HMPREF1058_RS11495 at 367.023 kb on + strand, within HMPREF1058_RS11495 at 367.035 kb on + strand at 367.045 kb on + strand, within HMPREF1058_RS11495 at 367.076 kb on + strand at 367.077 kb on - strand at 367.077 kb on - strand at 367.101 kb on + strand at 367.102 kb on - strand at 367.111 kb on + strand at 367.111 kb on + strand at 367.111 kb on + strand at 367.111 kb on + strand at 367.111 kb on + strand at 367.123 kb on - strand at 367.123 kb on - strand at 367.214 kb on - strand at 367.216 kb on - strand at 367.290 kb on + strand at 367.291 kb on - strand at 367.309 kb on + strand at 367.332 kb on + strand at 367.436 kb on + strand, within HMPREF1058_RS11490 at 367.437 kb on - strand, within HMPREF1058_RS11490 at 367.623 kb on - strand, within HMPREF1058_RS11490 at 367.801 kb on + strand, within HMPREF1058_RS11490 at 367.802 kb on - strand, within HMPREF1058_RS11490 at 367.859 kb on + strand, within HMPREF1058_RS11490 at 367.930 kb on + strand, within HMPREF1058_RS11490 at 367.931 kb on - strand, within HMPREF1058_RS11490 at 367.934 kb on + strand, within HMPREF1058_RS11490 at 367.975 kb on + strand, within HMPREF1058_RS11490 at 367.976 kb on - strand, within HMPREF1058_RS11490 at 368.071 kb on + strand, within HMPREF1058_RS11490 at 368.288 kb on + strand, within HMPREF1058_RS11490 at 368.314 kb on + strand at 368.372 kb on - strand at 368.378 kb on + strand at 368.414 kb on + strand at 368.414 kb on + strand at 368.416 kb on + strand at 368.417 kb on - strand at 368.534 kb on + strand at 368.534 kb on + strand at 368.535 kb on - strand at 368.687 kb on - strand, within HMPREF1058_RS11485 at 368.708 kb on + strand, within HMPREF1058_RS11485 at 368.709 kb on - strand, within HMPREF1058_RS11485 at 368.710 kb on + strand, within HMPREF1058_RS11485 at 368.710 kb on + strand, within HMPREF1058_RS11485 at 368.711 kb on - strand, within HMPREF1058_RS11485 at 368.733 kb on + strand, within HMPREF1058_RS11485 at 368.733 kb on + strand, within HMPREF1058_RS11485 at 368.893 kb on + strand, within HMPREF1058_RS11485 at 368.969 kb on - strand, within HMPREF1058_RS11485 at 369.040 kb on + strand, within HMPREF1058_RS11485 at 369.041 kb on - strand, within HMPREF1058_RS11485 at 369.245 kb on + strand, within HMPREF1058_RS11485
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 366,357 + -1.7 366,422 + -0.5 366,423 - +0.5 366,427 - +0.2 366,436 - -1.7 366,478 + +0.1 366,492 + +0.7 366,534 + -0.1 366,534 + +0.8 366,562 + +0.6 366,571 + +0.0 366,712 + -0.4 366,713 - -0.2 366,715 + +0.1 366,717 + +2.0 366,717 + +0.5 366,718 - +0.7 366,773 + HMPREF1058_RS11495 0.12 -0.1 366,777 + HMPREF1058_RS11495 0.13 +0.6 366,778 - HMPREF1058_RS11495 0.13 -0.5 366,842 + HMPREF1058_RS11495 0.30 -0.9 366,843 - HMPREF1058_RS11495 0.30 +0.3 366,851 + HMPREF1058_RS11495 0.32 +2.7 366,895 - HMPREF1058_RS11495 0.43 -3.7 366,897 + HMPREF1058_RS11495 0.44 +0.6 366,898 - HMPREF1058_RS11495 0.44 +1.2 366,898 - HMPREF1058_RS11495 0.44 +0.5 366,901 + HMPREF1058_RS11495 0.45 +1.0 366,904 - HMPREF1058_RS11495 0.46 -1.5 366,916 + HMPREF1058_RS11495 0.49 +0.5 366,916 + HMPREF1058_RS11495 0.49 -1.0 366,942 + HMPREF1058_RS11495 0.56 +0.9 367,011 + HMPREF1058_RS11495 0.73 -0.3 367,011 + HMPREF1058_RS11495 0.73 -0.0 367,012 - HMPREF1058_RS11495 0.74 -0.6 367,015 + +1.3 367,016 - HMPREF1058_RS11495 0.75 -0.7 367,023 + HMPREF1058_RS11495 0.76 +1.5 367,035 + -0.8 367,045 + HMPREF1058_RS11495 0.82 -1.3 367,076 + -1.6 367,077 - -0.5 367,077 - -0.5 367,101 + -0.5 367,102 - -0.1 367,111 + -0.8 367,111 + +0.7 367,111 + +0.8 367,111 + +1.1 367,111 + +0.6 367,123 - -1.3 367,123 - +1.2 367,214 - -0.3 367,216 - +1.0 367,290 + -0.7 367,291 - +0.3 367,309 + -2.1 367,332 + -0.7 367,436 + HMPREF1058_RS11490 0.11 -1.2 367,437 - HMPREF1058_RS11490 0.11 -0.5 367,623 - HMPREF1058_RS11490 0.28 -1.5 367,801 + HMPREF1058_RS11490 0.44 +0.0 367,802 - HMPREF1058_RS11490 0.44 -0.5 367,859 + HMPREF1058_RS11490 0.49 +1.0 367,930 + HMPREF1058_RS11490 0.56 -1.9 367,931 - HMPREF1058_RS11490 0.56 -2.0 367,934 + HMPREF1058_RS11490 0.56 -3.9 367,975 + HMPREF1058_RS11490 0.60 -3.1 367,976 - HMPREF1058_RS11490 0.60 -0.7 368,071 + HMPREF1058_RS11490 0.68 -1.5 368,288 + HMPREF1058_RS11490 0.88 +0.7 368,314 + +0.0 368,372 - -2.4 368,378 + -1.4 368,414 + +0.9 368,414 + -0.1 368,416 + +1.0 368,417 - +0.1 368,534 + +0.1 368,534 + +0.2 368,535 - +2.1 368,687 - HMPREF1058_RS11485 0.16 -1.6 368,708 + HMPREF1058_RS11485 0.19 -0.5 368,709 - HMPREF1058_RS11485 0.19 -1.5 368,710 + HMPREF1058_RS11485 0.19 +0.9 368,710 + HMPREF1058_RS11485 0.19 +1.5 368,711 - HMPREF1058_RS11485 0.19 +0.5 368,733 + HMPREF1058_RS11485 0.21 +0.6 368,733 + HMPREF1058_RS11485 0.21 -1.3 368,893 + HMPREF1058_RS11485 0.39 +1.8 368,969 - HMPREF1058_RS11485 0.47 +0.5 369,040 + HMPREF1058_RS11485 0.55 -1.0 369,041 - HMPREF1058_RS11485 0.55 -0.8 369,245 + HMPREF1058_RS11485 0.78 -0.2
Or see this region's nucleotide sequence