Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11045 and HMPREF1058_RS11040 are separated by 63 nucleotides HMPREF1058_RS11040 and HMPREF1058_RS11035 are separated by 70 nucleotides
HMPREF1058_RS11045: HMPREF1058_RS11045 - DUF4861 domain-containing protein, at 491,979 to 493,151
_RS11045
HMPREF1058_RS11040: HMPREF1058_RS11040 - polysaccharide deacetylase family protein, at 493,215 to 493,826
_RS11040
HMPREF1058_RS11035: HMPREF1058_RS11035 - DUF2723 domain-containing protein, at 493,897 to 497,301
_RS11035
Position (kb) 493
494 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 492.257 kb on + strand, within HMPREF1058_RS11045 at 492.258 kb on - strand, within HMPREF1058_RS11045 at 492.258 kb on - strand, within HMPREF1058_RS11045 at 492.258 kb on - strand, within HMPREF1058_RS11045 at 492.258 kb on - strand, within HMPREF1058_RS11045 at 492.496 kb on + strand, within HMPREF1058_RS11045 at 492.497 kb on - strand, within HMPREF1058_RS11045 at 492.575 kb on + strand, within HMPREF1058_RS11045 at 492.575 kb on + strand, within HMPREF1058_RS11045 at 492.591 kb on + strand, within HMPREF1058_RS11045 at 492.671 kb on - strand, within HMPREF1058_RS11045 at 492.821 kb on + strand, within HMPREF1058_RS11045 at 492.822 kb on - strand, within HMPREF1058_RS11045 at 492.846 kb on - strand, within HMPREF1058_RS11045 at 492.847 kb on + strand, within HMPREF1058_RS11045 at 492.847 kb on + strand, within HMPREF1058_RS11045 at 492.847 kb on + strand, within HMPREF1058_RS11045 at 492.847 kb on + strand, within HMPREF1058_RS11045 at 492.847 kb on + strand, within HMPREF1058_RS11045 at 492.848 kb on - strand, within HMPREF1058_RS11045 at 492.848 kb on - strand, within HMPREF1058_RS11045 at 492.848 kb on - strand, within HMPREF1058_RS11045 at 492.848 kb on - strand at 492.848 kb on - strand, within HMPREF1058_RS11045 at 492.897 kb on + strand, within HMPREF1058_RS11045 at 492.902 kb on - strand, within HMPREF1058_RS11045 at 493.036 kb on - strand at 493.063 kb on - strand at 493.095 kb on + strand at 493.096 kb on - strand at 493.107 kb on + strand at 493.108 kb on - strand at 493.124 kb on + strand at 493.125 kb on - strand at 493.125 kb on - strand at 493.157 kb on - strand at 493.158 kb on + strand at 493.159 kb on - strand at 493.159 kb on - strand at 493.174 kb on + strand at 493.181 kb on - strand at 493.182 kb on + strand at 493.204 kb on - strand at 493.279 kb on + strand, within HMPREF1058_RS11040 at 493.342 kb on + strand, within HMPREF1058_RS11040 at 493.389 kb on - strand, within HMPREF1058_RS11040 at 493.447 kb on + strand, within HMPREF1058_RS11040 at 493.447 kb on + strand, within HMPREF1058_RS11040 at 493.447 kb on + strand, within HMPREF1058_RS11040 at 493.448 kb on - strand, within HMPREF1058_RS11040 at 493.532 kb on - strand, within HMPREF1058_RS11040 at 493.603 kb on - strand, within HMPREF1058_RS11040 at 493.675 kb on + strand, within HMPREF1058_RS11040 at 493.676 kb on - strand, within HMPREF1058_RS11040 at 493.686 kb on + strand, within HMPREF1058_RS11040 at 493.742 kb on - strand, within HMPREF1058_RS11040 at 493.818 kb on + strand at 493.819 kb on - strand at 493.860 kb on - strand at 493.860 kb on - strand at 493.894 kb on + strand at 493.943 kb on + strand at 493.943 kb on + strand at 493.944 kb on - strand at 494.015 kb on - strand at 494.015 kb on - strand at 494.142 kb on - strand at 494.142 kb on - strand at 494.142 kb on - strand at 494.142 kb on - strand at 494.142 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 492,257 + HMPREF1058_RS11045 0.24 +0.6 492,258 - HMPREF1058_RS11045 0.24 -1.2 492,258 - HMPREF1058_RS11045 0.24 -0.9 492,258 - HMPREF1058_RS11045 0.24 -2.3 492,258 - HMPREF1058_RS11045 0.24 -0.9 492,496 + HMPREF1058_RS11045 0.44 -3.4 492,497 - HMPREF1058_RS11045 0.44 -0.2 492,575 + HMPREF1058_RS11045 0.51 -0.3 492,575 + HMPREF1058_RS11045 0.51 -0.4 492,591 + HMPREF1058_RS11045 0.52 -0.6 492,671 - HMPREF1058_RS11045 0.59 -3.8 492,821 + HMPREF1058_RS11045 0.72 +0.3 492,822 - HMPREF1058_RS11045 0.72 -4.2 492,846 - HMPREF1058_RS11045 0.74 +0.5 492,847 + HMPREF1058_RS11045 0.74 -0.4 492,847 + HMPREF1058_RS11045 0.74 -2.8 492,847 + HMPREF1058_RS11045 0.74 -0.2 492,847 + HMPREF1058_RS11045 0.74 +2.0 492,847 + HMPREF1058_RS11045 0.74 -0.3 492,848 - HMPREF1058_RS11045 0.74 -1.8 492,848 - HMPREF1058_RS11045 0.74 -1.5 492,848 - HMPREF1058_RS11045 0.74 -4.5 492,848 - +1.8 492,848 - HMPREF1058_RS11045 0.74 -3.8 492,897 + HMPREF1058_RS11045 0.78 +1.0 492,902 - HMPREF1058_RS11045 0.79 -0.7 493,036 - -2.6 493,063 - +0.3 493,095 + -0.3 493,096 - -0.6 493,107 + -0.1 493,108 - -1.2 493,124 + +0.6 493,125 - -0.4 493,125 - -2.9 493,157 - -0.1 493,158 + -1.8 493,159 - +1.4 493,159 - -0.5 493,174 + +0.1 493,181 - +1.2 493,182 + -1.1 493,204 - +0.3 493,279 + HMPREF1058_RS11040 0.10 -0.9 493,342 + HMPREF1058_RS11040 0.21 -3.6 493,389 - HMPREF1058_RS11040 0.28 -0.7 493,447 + HMPREF1058_RS11040 0.38 +0.5 493,447 + HMPREF1058_RS11040 0.38 -1.7 493,447 + HMPREF1058_RS11040 0.38 -0.4 493,448 - HMPREF1058_RS11040 0.38 -2.2 493,532 - HMPREF1058_RS11040 0.52 +1.2 493,603 - HMPREF1058_RS11040 0.63 -2.2 493,675 + HMPREF1058_RS11040 0.75 -3.6 493,676 - HMPREF1058_RS11040 0.75 -1.9 493,686 + HMPREF1058_RS11040 0.77 +0.3 493,742 - HMPREF1058_RS11040 0.86 -1.2 493,818 + -0.3 493,819 - -0.5 493,860 - +0.4 493,860 - +0.9 493,894 + -0.0 493,943 + -3.4 493,943 + +0.7 493,944 - -0.7 494,015 - -0.1 494,015 - -0.2 494,142 - -0.6 494,142 - +1.2 494,142 - -1.0 494,142 - -0.9 494,142 - -1.9
Or see this region's nucleotide sequence