Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10850 and HMPREF1058_RS10845 are separated by 14 nucleotides HMPREF1058_RS10845 and HMPREF1058_RS10840 are separated by 15 nucleotides HMPREF1058_RS10840 and HMPREF1058_RS10835 are separated by 83 nucleotides
HMPREF1058_RS10850: HMPREF1058_RS10850 - glycosyltransferase family 2 protein, at 548,624 to 549,523
_RS10850
HMPREF1058_RS10845: HMPREF1058_RS10845 - hypothetical protein, at 549,538 to 550,290
_RS10845
HMPREF1058_RS10840: HMPREF1058_RS10840 - hypothetical protein, at 550,306 to 551,022
_RS10840
HMPREF1058_RS10835: HMPREF1058_RS10835 - UDP-galactopyranose mutase, at 551,106 to 552,212
_RS10835
Position (kb) 550
551
552 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 549.306 kb on + strand, within HMPREF1058_RS10850 at 549.311 kb on + strand, within HMPREF1058_RS10850 at 549.311 kb on + strand, within HMPREF1058_RS10850 at 549.312 kb on - strand, within HMPREF1058_RS10850 at 549.312 kb on - strand, within HMPREF1058_RS10850 at 549.312 kb on - strand, within HMPREF1058_RS10850 at 549.321 kb on + strand, within HMPREF1058_RS10850 at 549.321 kb on + strand, within HMPREF1058_RS10850 at 549.321 kb on + strand, within HMPREF1058_RS10850 at 549.322 kb on - strand, within HMPREF1058_RS10850 at 549.322 kb on - strand, within HMPREF1058_RS10850 at 549.322 kb on - strand, within HMPREF1058_RS10850 at 549.416 kb on - strand, within HMPREF1058_RS10850 at 549.420 kb on - strand, within HMPREF1058_RS10850 at 549.515 kb on - strand at 550.479 kb on - strand, within HMPREF1058_RS10840 at 550.692 kb on - strand, within HMPREF1058_RS10840 at 550.796 kb on - strand, within HMPREF1058_RS10840 at 550.800 kb on - strand, within HMPREF1058_RS10840 at 551.036 kb on - strand at 551.059 kb on - strand at 551.059 kb on - strand at 551.167 kb on + strand at 551.315 kb on - strand, within HMPREF1058_RS10835 at 551.322 kb on + strand at 551.377 kb on + strand, within HMPREF1058_RS10835 at 551.444 kb on + strand, within HMPREF1058_RS10835 at 551.444 kb on + strand, within HMPREF1058_RS10835 at 551.445 kb on - strand, within HMPREF1058_RS10835 at 551.505 kb on + strand, within HMPREF1058_RS10835 at 551.505 kb on + strand, within HMPREF1058_RS10835 at 551.566 kb on + strand, within HMPREF1058_RS10835 at 551.566 kb on + strand, within HMPREF1058_RS10835 at 551.859 kb on + strand, within HMPREF1058_RS10835 at 551.860 kb on - strand, within HMPREF1058_RS10835 at 552.000 kb on + strand, within HMPREF1058_RS10835 at 552.001 kb on - strand, within HMPREF1058_RS10835 at 552.005 kb on - strand, within HMPREF1058_RS10835 at 552.020 kb on + strand, within HMPREF1058_RS10835
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 549,306 + HMPREF1058_RS10850 0.76 -0.9 549,311 + HMPREF1058_RS10850 0.76 +0.8 549,311 + HMPREF1058_RS10850 0.76 -3.1 549,312 - HMPREF1058_RS10850 0.76 -0.1 549,312 - HMPREF1058_RS10850 0.76 -0.2 549,312 - HMPREF1058_RS10850 0.76 +0.8 549,321 + HMPREF1058_RS10850 0.77 -0.3 549,321 + HMPREF1058_RS10850 0.77 -1.1 549,321 + HMPREF1058_RS10850 0.77 -5.0 549,322 - HMPREF1058_RS10850 0.78 -0.3 549,322 - HMPREF1058_RS10850 0.78 -0.8 549,322 - HMPREF1058_RS10850 0.78 -0.8 549,416 - HMPREF1058_RS10850 0.88 -2.1 549,420 - HMPREF1058_RS10850 0.88 -1.8 549,515 - -1.9 550,479 - HMPREF1058_RS10840 0.24 -0.9 550,692 - HMPREF1058_RS10840 0.54 -1.0 550,796 - HMPREF1058_RS10840 0.68 -1.9 550,800 - HMPREF1058_RS10840 0.69 -1.2 551,036 - -0.3 551,059 - +2.6 551,059 - -0.7 551,167 + -0.2 551,315 - HMPREF1058_RS10835 0.19 -1.0 551,322 + -0.8 551,377 + HMPREF1058_RS10835 0.24 -0.6 551,444 + HMPREF1058_RS10835 0.31 -1.8 551,444 + HMPREF1058_RS10835 0.31 -2.0 551,445 - HMPREF1058_RS10835 0.31 -1.3 551,505 + HMPREF1058_RS10835 0.36 -2.9 551,505 + HMPREF1058_RS10835 0.36 -1.9 551,566 + HMPREF1058_RS10835 0.42 +1.0 551,566 + HMPREF1058_RS10835 0.42 -2.9 551,859 + HMPREF1058_RS10835 0.68 -1.4 551,860 - HMPREF1058_RS10835 0.68 -2.4 552,000 + HMPREF1058_RS10835 0.81 -0.4 552,001 - HMPREF1058_RS10835 0.81 -0.2 552,005 - HMPREF1058_RS10835 0.81 -2.6 552,020 + HMPREF1058_RS10835 0.83 +0.0
Or see this region's nucleotide sequence