Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10375 and HMPREF1058_RS10370 are separated by 3 nucleotides HMPREF1058_RS10370 and HMPREF1058_RS10365 overlap by 4 nucleotides HMPREF1058_RS10365 and HMPREF1058_RS10360 overlap by 1 nucleotides HMPREF1058_RS10360 and HMPREF1058_RS10355 are separated by 3 nucleotides HMPREF1058_RS10355 and HMPREF1058_RS10350 are separated by 3 nucleotides HMPREF1058_RS10350 and HMPREF1058_RS10345 are separated by 12 nucleotides
HMPREF1058_RS10375: HMPREF1058_RS10375 - hypothetical protein, at 686,210 to 686,683
_RS10375
HMPREF1058_RS10370: HMPREF1058_RS10370 - hypothetical protein, at 686,687 to 687,094
_RS10370
HMPREF1058_RS10365: HMPREF1058_RS10365 - hypothetical protein, at 687,091 to 687,525
_RS10365
HMPREF1058_RS10360: HMPREF1058_RS10360 - hypothetical protein, at 687,525 to 687,836
_RS10360
HMPREF1058_RS10355: HMPREF1058_RS10355 - hypothetical protein, at 687,840 to 688,166
_RS10355
HMPREF1058_RS10350: HMPREF1058_RS10350 - hypothetical protein, at 688,170 to 688,517
_RS10350
HMPREF1058_RS10345: HMPREF1058_RS10345 - hypothetical protein, at 688,530 to 689,759
_RS10345
Position (kb) 687
688 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 686.665 kb on + strand at 686.666 kb on - strand at 686.717 kb on + strand at 686.718 kb on - strand at 686.735 kb on - strand, within HMPREF1058_RS10370 at 686.872 kb on + strand, within HMPREF1058_RS10370 at 686.902 kb on + strand, within HMPREF1058_RS10370 at 686.902 kb on + strand, within HMPREF1058_RS10370 at 686.906 kb on + strand, within HMPREF1058_RS10370 at 686.963 kb on + strand, within HMPREF1058_RS10370 at 686.963 kb on + strand, within HMPREF1058_RS10370 at 686.963 kb on + strand, within HMPREF1058_RS10370 at 686.966 kb on - strand, within HMPREF1058_RS10370 at 687.171 kb on + strand, within HMPREF1058_RS10365 at 687.171 kb on + strand, within HMPREF1058_RS10365 at 687.187 kb on + strand, within HMPREF1058_RS10365 at 687.187 kb on + strand, within HMPREF1058_RS10365 at 687.188 kb on - strand, within HMPREF1058_RS10365 at 687.191 kb on + strand at 687.191 kb on + strand, within HMPREF1058_RS10365 at 687.213 kb on + strand, within HMPREF1058_RS10365 at 687.214 kb on - strand, within HMPREF1058_RS10365 at 687.217 kb on + strand, within HMPREF1058_RS10365 at 687.217 kb on + strand, within HMPREF1058_RS10365 at 687.231 kb on + strand, within HMPREF1058_RS10365 at 687.318 kb on + strand, within HMPREF1058_RS10365 at 687.381 kb on + strand, within HMPREF1058_RS10365 at 687.432 kb on + strand, within HMPREF1058_RS10365 at 687.433 kb on - strand, within HMPREF1058_RS10365 at 687.444 kb on + strand, within HMPREF1058_RS10365 at 687.445 kb on - strand, within HMPREF1058_RS10365 at 687.445 kb on - strand, within HMPREF1058_RS10365 at 687.489 kb on + strand at 687.540 kb on + strand at 687.605 kb on + strand, within HMPREF1058_RS10360 at 687.614 kb on + strand, within HMPREF1058_RS10360 at 687.664 kb on + strand, within HMPREF1058_RS10360 at 687.695 kb on - strand, within HMPREF1058_RS10360 at 687.695 kb on - strand, within HMPREF1058_RS10360 at 687.759 kb on - strand, within HMPREF1058_RS10360 at 687.809 kb on + strand at 687.810 kb on - strand at 687.816 kb on + strand at 687.841 kb on + strand at 687.842 kb on - strand at 687.893 kb on + strand, within HMPREF1058_RS10355 at 687.893 kb on + strand, within HMPREF1058_RS10355 at 687.897 kb on + strand, within HMPREF1058_RS10355 at 687.898 kb on - strand, within HMPREF1058_RS10355 at 688.065 kb on + strand, within HMPREF1058_RS10355 at 688.065 kb on + strand, within HMPREF1058_RS10355 at 688.065 kb on + strand, within HMPREF1058_RS10355 at 688.065 kb on + strand, within HMPREF1058_RS10355 at 688.066 kb on - strand, within HMPREF1058_RS10355 at 688.179 kb on - strand at 688.182 kb on + strand at 688.507 kb on - strand at 688.599 kb on + strand at 688.697 kb on - strand, within HMPREF1058_RS10345 at 688.777 kb on - strand, within HMPREF1058_RS10345
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 686,665 + -2.0 686,666 - -0.1 686,717 + -1.0 686,718 - -2.8 686,735 - HMPREF1058_RS10370 0.12 -1.5 686,872 + HMPREF1058_RS10370 0.45 +0.9 686,902 + HMPREF1058_RS10370 0.53 +0.4 686,902 + HMPREF1058_RS10370 0.53 +1.3 686,906 + HMPREF1058_RS10370 0.54 -0.8 686,963 + HMPREF1058_RS10370 0.68 -0.0 686,963 + HMPREF1058_RS10370 0.68 -0.4 686,963 + HMPREF1058_RS10370 0.68 -0.4 686,966 - HMPREF1058_RS10370 0.68 +0.1 687,171 + HMPREF1058_RS10365 0.18 -0.3 687,171 + HMPREF1058_RS10365 0.18 -1.5 687,187 + HMPREF1058_RS10365 0.22 -0.7 687,187 + HMPREF1058_RS10365 0.22 +0.4 687,188 - HMPREF1058_RS10365 0.22 +0.6 687,191 + -1.0 687,191 + HMPREF1058_RS10365 0.23 -3.6 687,213 + HMPREF1058_RS10365 0.28 -3.0 687,214 - HMPREF1058_RS10365 0.28 +0.6 687,217 + HMPREF1058_RS10365 0.29 -0.4 687,217 + HMPREF1058_RS10365 0.29 -0.7 687,231 + HMPREF1058_RS10365 0.32 +2.0 687,318 + HMPREF1058_RS10365 0.52 +0.5 687,381 + HMPREF1058_RS10365 0.67 -2.1 687,432 + HMPREF1058_RS10365 0.78 +1.1 687,433 - HMPREF1058_RS10365 0.79 +0.1 687,444 + HMPREF1058_RS10365 0.81 -0.9 687,445 - HMPREF1058_RS10365 0.81 +0.1 687,445 - HMPREF1058_RS10365 0.81 +1.9 687,489 + -1.4 687,540 + -2.9 687,605 + HMPREF1058_RS10360 0.26 -1.8 687,614 + HMPREF1058_RS10360 0.29 +0.1 687,664 + HMPREF1058_RS10360 0.45 -0.0 687,695 - HMPREF1058_RS10360 0.54 +0.5 687,695 - HMPREF1058_RS10360 0.54 -0.5 687,759 - HMPREF1058_RS10360 0.75 -1.0 687,809 + -1.6 687,810 - +0.3 687,816 + -0.6 687,841 + +0.2 687,842 - -2.7 687,893 + HMPREF1058_RS10355 0.16 -2.1 687,893 + HMPREF1058_RS10355 0.16 -2.5 687,897 + HMPREF1058_RS10355 0.17 -0.6 687,898 - HMPREF1058_RS10355 0.18 -3.0 688,065 + HMPREF1058_RS10355 0.69 -0.5 688,065 + HMPREF1058_RS10355 0.69 +0.5 688,065 + HMPREF1058_RS10355 0.69 -0.1 688,065 + HMPREF1058_RS10355 0.69 +0.6 688,066 - HMPREF1058_RS10355 0.69 -1.5 688,179 - -0.7 688,182 + -1.2 688,507 - -0.3 688,599 + -0.2 688,697 - HMPREF1058_RS10345 0.14 -0.2 688,777 - HMPREF1058_RS10345 0.20 -1.3
Or see this region's nucleotide sequence