Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS10075

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS10080 and HMPREF1058_RS10075 are separated by 23 nucleotidesHMPREF1058_RS10075 and HMPREF1058_RS10070 are separated by 156 nucleotides HMPREF1058_RS10080: HMPREF1058_RS10080 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 725,638 to 727,485 _RS10080 HMPREF1058_RS10075: HMPREF1058_RS10075 - 2-oxoacid:ferredoxin oxidoreductase subunit beta, at 727,509 to 728,513 _RS10075 HMPREF1058_RS10070: HMPREF1058_RS10070 - uracil phosphoribosyltransferase, at 728,670 to 729,329 _RS10070 Position (kb) 727 728 729Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 726.576 kb on + strand, within HMPREF1058_RS10080at 726.638 kb on + strand, within HMPREF1058_RS10080at 726.638 kb on + strand, within HMPREF1058_RS10080at 726.639 kb on - strand, within HMPREF1058_RS10080at 726.652 kb on - strand, within HMPREF1058_RS10080at 726.659 kb on + strand, within HMPREF1058_RS10080at 726.659 kb on + strand, within HMPREF1058_RS10080at 726.799 kb on + strand, within HMPREF1058_RS10080at 726.800 kb on - strand, within HMPREF1058_RS10080at 726.810 kb on + strand, within HMPREF1058_RS10080at 726.810 kb on + strand, within HMPREF1058_RS10080at 726.811 kb on - strand, within HMPREF1058_RS10080at 726.928 kb on + strand, within HMPREF1058_RS10080at 726.928 kb on + strand, within HMPREF1058_RS10080at 726.929 kb on - strand, within HMPREF1058_RS10080at 726.929 kb on - strand, within HMPREF1058_RS10080at 726.952 kb on - strand, within HMPREF1058_RS10080at 726.952 kb on - strand, within HMPREF1058_RS10080at 727.024 kb on - strandat 727.024 kb on - strand, within HMPREF1058_RS10080at 727.030 kb on - strand, within HMPREF1058_RS10080at 727.068 kb on + strand, within HMPREF1058_RS10080at 727.069 kb on - strand, within HMPREF1058_RS10080at 727.093 kb on - strand, within HMPREF1058_RS10080at 727.207 kb on + strand, within HMPREF1058_RS10080at 727.207 kb on + strand, within HMPREF1058_RS10080at 727.208 kb on - strand, within HMPREF1058_RS10080at 727.217 kb on + strand, within HMPREF1058_RS10080at 727.218 kb on - strand, within HMPREF1058_RS10080at 727.218 kb on - strand, within HMPREF1058_RS10080at 727.220 kb on - strand, within HMPREF1058_RS10080at 727.302 kb on + strandat 727.326 kb on + strandat 727.439 kb on + strandat 727.480 kb on - strandat 727.519 kb on - strandat 727.677 kb on + strand, within HMPREF1058_RS10075at 727.680 kb on + strand, within HMPREF1058_RS10075at 727.681 kb on - strand, within HMPREF1058_RS10075at 727.688 kb on + strand, within HMPREF1058_RS10075at 727.688 kb on + strand, within HMPREF1058_RS10075at 727.689 kb on - strand, within HMPREF1058_RS10075at 727.689 kb on - strand, within HMPREF1058_RS10075at 727.689 kb on - strand, within HMPREF1058_RS10075at 727.693 kb on - strand, within HMPREF1058_RS10075at 727.728 kb on - strand, within HMPREF1058_RS10075at 727.763 kb on + strand, within HMPREF1058_RS10075at 727.900 kb on - strand, within HMPREF1058_RS10075at 727.928 kb on + strand, within HMPREF1058_RS10075at 728.072 kb on + strand, within HMPREF1058_RS10075at 728.073 kb on - strand, within HMPREF1058_RS10075at 728.086 kb on + strand, within HMPREF1058_RS10075at 728.140 kb on + strand, within HMPREF1058_RS10075at 728.140 kb on + strandat 728.141 kb on - strand, within HMPREF1058_RS10075at 728.143 kb on - strand, within HMPREF1058_RS10075at 728.144 kb on + strand, within HMPREF1058_RS10075at 728.144 kb on + strand, within HMPREF1058_RS10075at 728.145 kb on - strand, within HMPREF1058_RS10075at 728.176 kb on - strand, within HMPREF1058_RS10075at 728.210 kb on - strand, within HMPREF1058_RS10075at 728.296 kb on + strand, within HMPREF1058_RS10075at 728.409 kb on + strand, within HMPREF1058_RS10075at 728.532 kb on - strandat 728.578 kb on + strandat 728.579 kb on - strandat 728.612 kb on - strandat 728.659 kb on + strandat 728.659 kb on + strandat 728.659 kb on + strandat 728.659 kb on + strandat 728.660 kb on - strandat 728.726 kb on - strandat 728.726 kb on - strandat 728.751 kb on + strand, within HMPREF1058_RS10070at 728.801 kb on + strand, within HMPREF1058_RS10070at 728.868 kb on - strand, within HMPREF1058_RS10070at 728.977 kb on - strand, within HMPREF1058_RS10070at 728.982 kb on + strand, within HMPREF1058_RS10070at 728.988 kb on - strand, within HMPREF1058_RS10070at 729.157 kb on - strand, within HMPREF1058_RS10070at 729.197 kb on - strand, within HMPREF1058_RS10070at 729.261 kb on + strand, within HMPREF1058_RS10070at 729.262 kb on - strand, within HMPREF1058_RS10070at 729.279 kb on + strandat 729.284 kb on - strandat 729.284 kb on - strandat 729.333 kb on + strandat 729.345 kb on - strandat 729.345 kb on - strandat 729.347 kb on - strandat 729.378 kb on - strandat 729.425 kb on + strandat 729.429 kb on + strandat 729.486 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
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726,576 + HMPREF1058_RS10080 0.51 -0.8
726,638 + HMPREF1058_RS10080 0.54 -3.2
726,638 + HMPREF1058_RS10080 0.54 +0.1
726,639 - HMPREF1058_RS10080 0.54 -1.1
726,652 - HMPREF1058_RS10080 0.55 -1.2
726,659 + HMPREF1058_RS10080 0.55 -2.3
726,659 + HMPREF1058_RS10080 0.55 -1.0
726,799 + HMPREF1058_RS10080 0.63 -2.6
726,800 - HMPREF1058_RS10080 0.63 -2.4
726,810 + HMPREF1058_RS10080 0.63 -0.5
726,810 + HMPREF1058_RS10080 0.63 -1.6
726,811 - HMPREF1058_RS10080 0.63 -2.3
726,928 + HMPREF1058_RS10080 0.70 -0.8
726,928 + HMPREF1058_RS10080 0.70 -3.1
726,929 - HMPREF1058_RS10080 0.70 -1.9
726,929 - HMPREF1058_RS10080 0.70 -1.7
726,952 - HMPREF1058_RS10080 0.71 -0.4
726,952 - HMPREF1058_RS10080 0.71 -3.1
727,024 - -0.8
727,024 - HMPREF1058_RS10080 0.75 -1.5
727,030 - HMPREF1058_RS10080 0.75 -0.6
727,068 + HMPREF1058_RS10080 0.77 +0.3
727,069 - HMPREF1058_RS10080 0.77 -3.2
727,093 - HMPREF1058_RS10080 0.79 -4.8
727,207 + HMPREF1058_RS10080 0.85 -1.5
727,207 + HMPREF1058_RS10080 0.85 -2.2
727,208 - HMPREF1058_RS10080 0.85 -1.9
727,217 + HMPREF1058_RS10080 0.85 -2.1
727,218 - HMPREF1058_RS10080 0.85 -3.0
727,218 - HMPREF1058_RS10080 0.85 -1.5
727,220 - HMPREF1058_RS10080 0.86 -2.2
727,302 + -1.8
727,326 + -2.0
727,439 + -1.0
727,480 - -1.5
727,519 - -0.4
727,677 + HMPREF1058_RS10075 0.17 -0.6
727,680 + HMPREF1058_RS10075 0.17 -2.0
727,681 - HMPREF1058_RS10075 0.17 -2.3
727,688 + HMPREF1058_RS10075 0.18 -1.4
727,688 + HMPREF1058_RS10075 0.18 -0.9
727,689 - HMPREF1058_RS10075 0.18 +2.4
727,689 - HMPREF1058_RS10075 0.18 -4.6
727,689 - HMPREF1058_RS10075 0.18 -3.9
727,693 - HMPREF1058_RS10075 0.18 -2.2
727,728 - HMPREF1058_RS10075 0.22 -0.9
727,763 + HMPREF1058_RS10075 0.25 -1.7
727,900 - HMPREF1058_RS10075 0.39 -0.4
727,928 + HMPREF1058_RS10075 0.42 +0.8
728,072 + HMPREF1058_RS10075 0.56 -1.1
728,073 - HMPREF1058_RS10075 0.56 -3.0
728,086 + HMPREF1058_RS10075 0.57 -1.6
728,140 + HMPREF1058_RS10075 0.63 -1.3
728,140 + +1.5
728,141 - HMPREF1058_RS10075 0.63 -3.4
728,143 - HMPREF1058_RS10075 0.63 -0.4
728,144 + HMPREF1058_RS10075 0.63 -0.3
728,144 + HMPREF1058_RS10075 0.63 +0.2
728,145 - HMPREF1058_RS10075 0.63 -1.4
728,176 - HMPREF1058_RS10075 0.66 -1.7
728,210 - HMPREF1058_RS10075 0.70 -0.7
728,296 + HMPREF1058_RS10075 0.78 -0.4
728,409 + HMPREF1058_RS10075 0.90 -0.0
728,532 - +3.0
728,578 + -1.4
728,579 - -2.7
728,612 - -0.3
728,659 + +0.3
728,659 + -0.4
728,659 + -2.2
728,659 + -0.6
728,660 - +1.2
728,726 - +0.2
728,726 - -0.3
728,751 + HMPREF1058_RS10070 0.12 -1.4
728,801 + HMPREF1058_RS10070 0.20 -0.6
728,868 - HMPREF1058_RS10070 0.30 +0.1
728,977 - HMPREF1058_RS10070 0.47 -0.2
728,982 + HMPREF1058_RS10070 0.47 -0.1
728,988 - HMPREF1058_RS10070 0.48 -2.0
729,157 - HMPREF1058_RS10070 0.74 -0.2
729,197 - HMPREF1058_RS10070 0.80 -0.9
729,261 + HMPREF1058_RS10070 0.90 -1.4
729,262 - HMPREF1058_RS10070 0.90 -0.3
729,279 + -0.0
729,284 - +2.4
729,284 - +1.0
729,333 + +0.5
729,345 - +1.1
729,345 - +0.9
729,347 - +0.4
729,378 - +0.8
729,425 + -0.2
729,429 + -2.4
729,486 + -0.5

Or see this region's nucleotide sequence