Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09975 and HMPREF1058_RS09970 are separated by 24 nucleotides HMPREF1058_RS09970 and HMPREF1058_RS09965 are separated by 20 nucleotides HMPREF1058_RS09965 and HMPREF1058_RS09960 overlap by 4 nucleotides HMPREF1058_RS09960 and HMPREF1058_RS09955 are separated by 45 nucleotides HMPREF1058_RS09955 and HMPREF1058_RS20750 are separated by 117 nucleotides HMPREF1058_RS20750 and HMPREF1058_RS09945 are separated by 50 nucleotides
HMPREF1058_RS09975: HMPREF1058_RS09975 - PcfJ family protein, at 753,367 to 754,656
_RS09975
HMPREF1058_RS09970: HMPREF1058_RS09970 - hypothetical protein, at 754,681 to 754,938
_RS09970
HMPREF1058_RS09965: HMPREF1058_RS09965 - DUF3873 domain-containing protein, at 754,959 to 755,192
_RS09965
HMPREF1058_RS09960: HMPREF1058_RS09960 - hypothetical protein, at 755,189 to 755,434
_RS09960
HMPREF1058_RS09955: HMPREF1058_RS09955 - hypothetical protein, at 755,480 to 755,788
_RS09955
HMPREF1058_RS20750: HMPREF1058_RS20750 - hypothetical protein, at 755,906 to 756,127
_RS20750
HMPREF1058_RS09945: HMPREF1058_RS09945 - hypothetical protein, at 756,178 to 757,161
_RS09945
Position (kb) 755
756 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 754.655 kb on - strand at 754.658 kb on - strand at 754.688 kb on + strand at 754.843 kb on + strand, within HMPREF1058_RS09970 at 754.867 kb on + strand, within HMPREF1058_RS09970 at 754.985 kb on + strand, within HMPREF1058_RS09965 at 754.988 kb on - strand, within HMPREF1058_RS09965 at 754.988 kb on - strand, within HMPREF1058_RS09965 at 755.035 kb on + strand, within HMPREF1058_RS09965 at 755.036 kb on - strand, within HMPREF1058_RS09965 at 755.150 kb on + strand, within HMPREF1058_RS09965 at 755.201 kb on + strand at 755.233 kb on + strand, within HMPREF1058_RS09960 at 755.344 kb on + strand, within HMPREF1058_RS09960 at 755.508 kb on + strand at 755.728 kb on - strand, within HMPREF1058_RS09955 at 755.811 kb on + strand at 755.816 kb on + strand at 755.964 kb on + strand, within HMPREF1058_RS20750 at 755.965 kb on - strand, within HMPREF1058_RS20750 at 756.014 kb on + strand, within HMPREF1058_RS20750 at 756.023 kb on + strand, within HMPREF1058_RS20750 at 756.023 kb on + strand, within HMPREF1058_RS20750 at 756.023 kb on + strand, within HMPREF1058_RS20750 at 756.023 kb on + strand, within HMPREF1058_RS20750 at 756.023 kb on + strand, within HMPREF1058_RS20750 at 756.025 kb on + strand, within HMPREF1058_RS20750 at 756.179 kb on + strand at 756.180 kb on - strand at 756.181 kb on + strand at 756.182 kb on - strand at 756.225 kb on + strand at 756.257 kb on + strand at 756.267 kb on + strand at 756.267 kb on + strand at 756.267 kb on + strand at 756.268 kb on - strand at 756.268 kb on - strand at 756.269 kb on + strand at 756.269 kb on + strand at 756.334 kb on + strand, within HMPREF1058_RS09945 at 756.335 kb on - strand, within HMPREF1058_RS09945 at 756.335 kb on - strand, within HMPREF1058_RS09945 at 756.352 kb on + strand, within HMPREF1058_RS09945 at 756.353 kb on - strand, within HMPREF1058_RS09945 at 756.356 kb on + strand, within HMPREF1058_RS09945 at 756.357 kb on - strand, within HMPREF1058_RS09945 at 756.482 kb on - strand, within HMPREF1058_RS09945 at 756.482 kb on - strand, within HMPREF1058_RS09945 at 756.485 kb on - strand, within HMPREF1058_RS09945 at 756.504 kb on + strand, within HMPREF1058_RS09945 at 756.504 kb on + strand, within HMPREF1058_RS09945 at 756.504 kb on + strand, within HMPREF1058_RS09945 at 756.504 kb on + strand, within HMPREF1058_RS09945 at 756.504 kb on + strand, within HMPREF1058_RS09945 at 756.505 kb on - strand, within HMPREF1058_RS09945 at 756.505 kb on - strand, within HMPREF1058_RS09945 at 756.506 kb on + strand, within HMPREF1058_RS09945 at 756.507 kb on - strand, within HMPREF1058_RS09945 at 756.507 kb on - strand, within HMPREF1058_RS09945 at 756.507 kb on - strand, within HMPREF1058_RS09945 at 756.550 kb on - strand, within HMPREF1058_RS09945 at 756.583 kb on + strand, within HMPREF1058_RS09945 at 756.583 kb on + strand, within HMPREF1058_RS09945 at 756.584 kb on - strand, within HMPREF1058_RS09945 at 756.584 kb on - strand, within HMPREF1058_RS09945 at 756.584 kb on - strand, within HMPREF1058_RS09945 at 756.584 kb on - strand, within HMPREF1058_RS09945 at 756.585 kb on + strand, within HMPREF1058_RS09945 at 756.623 kb on - strand, within HMPREF1058_RS09945 at 756.627 kb on - strand, within HMPREF1058_RS09945 at 756.650 kb on + strand, within HMPREF1058_RS09945 at 756.651 kb on - strand, within HMPREF1058_RS09945 at 756.651 kb on - strand, within HMPREF1058_RS09945 at 756.651 kb on - strand, within HMPREF1058_RS09945 at 756.652 kb on + strand, within HMPREF1058_RS09945 at 756.652 kb on + strand, within HMPREF1058_RS09945 at 756.655 kb on - strand, within HMPREF1058_RS09945 at 756.655 kb on - strand, within HMPREF1058_RS09945 at 756.674 kb on + strand, within HMPREF1058_RS09945 at 756.676 kb on + strand, within HMPREF1058_RS09945 at 756.677 kb on - strand, within HMPREF1058_RS09945 at 756.677 kb on - strand, within HMPREF1058_RS09945 at 756.677 kb on - strand, within HMPREF1058_RS09945 at 756.677 kb on - strand, within HMPREF1058_RS09945 at 756.721 kb on - strand, within HMPREF1058_RS09945 at 756.753 kb on + strand, within HMPREF1058_RS09945
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 754,655 - +0.4 754,658 - +0.0 754,688 + +0.3 754,843 + HMPREF1058_RS09970 0.63 +0.1 754,867 + HMPREF1058_RS09970 0.72 -0.5 754,985 + HMPREF1058_RS09965 0.11 +0.7 754,988 - HMPREF1058_RS09965 0.12 -0.7 754,988 - HMPREF1058_RS09965 0.12 -1.3 755,035 + HMPREF1058_RS09965 0.32 -0.5 755,036 - HMPREF1058_RS09965 0.33 -0.6 755,150 + HMPREF1058_RS09965 0.82 +1.1 755,201 + -1.1 755,233 + HMPREF1058_RS09960 0.18 -0.1 755,344 + HMPREF1058_RS09960 0.63 -1.2 755,508 + -0.5 755,728 - HMPREF1058_RS09955 0.80 -1.1 755,811 + +1.1 755,816 + -0.4 755,964 + HMPREF1058_RS20750 0.26 +0.4 755,965 - HMPREF1058_RS20750 0.27 -2.7 756,014 + HMPREF1058_RS20750 0.49 -2.2 756,023 + HMPREF1058_RS20750 0.53 -2.3 756,023 + HMPREF1058_RS20750 0.53 +1.1 756,023 + HMPREF1058_RS20750 0.53 -1.5 756,023 + HMPREF1058_RS20750 0.53 -0.7 756,023 + HMPREF1058_RS20750 0.53 -1.0 756,025 + HMPREF1058_RS20750 0.54 +0.8 756,179 + +0.1 756,180 - -0.4 756,181 + +0.6 756,182 - +1.3 756,225 + +1.3 756,257 + -0.2 756,267 + -0.1 756,267 + +0.2 756,267 + +0.8 756,268 - +0.3 756,268 - -2.8 756,269 + -0.7 756,269 + -0.3 756,334 + HMPREF1058_RS09945 0.16 -1.1 756,335 - HMPREF1058_RS09945 0.16 -0.5 756,335 - HMPREF1058_RS09945 0.16 +0.6 756,352 + HMPREF1058_RS09945 0.18 -0.4 756,353 - HMPREF1058_RS09945 0.18 -0.7 756,356 + HMPREF1058_RS09945 0.18 -1.9 756,357 - HMPREF1058_RS09945 0.18 +0.1 756,482 - HMPREF1058_RS09945 0.31 -0.2 756,482 - HMPREF1058_RS09945 0.31 -1.9 756,485 - HMPREF1058_RS09945 0.31 -0.3 756,504 + HMPREF1058_RS09945 0.33 +0.1 756,504 + HMPREF1058_RS09945 0.33 +0.6 756,504 + HMPREF1058_RS09945 0.33 -2.2 756,504 + HMPREF1058_RS09945 0.33 +1.8 756,504 + HMPREF1058_RS09945 0.33 +0.2 756,505 - HMPREF1058_RS09945 0.33 +0.4 756,505 - HMPREF1058_RS09945 0.33 -1.2 756,506 + HMPREF1058_RS09945 0.33 +0.7 756,507 - HMPREF1058_RS09945 0.33 +0.6 756,507 - HMPREF1058_RS09945 0.33 -0.4 756,507 - HMPREF1058_RS09945 0.33 -0.3 756,550 - HMPREF1058_RS09945 0.38 -0.1 756,583 + HMPREF1058_RS09945 0.41 -1.1 756,583 + HMPREF1058_RS09945 0.41 +0.3 756,584 - HMPREF1058_RS09945 0.41 +0.6 756,584 - HMPREF1058_RS09945 0.41 +0.4 756,584 - HMPREF1058_RS09945 0.41 -0.1 756,584 - HMPREF1058_RS09945 0.41 -1.2 756,585 + HMPREF1058_RS09945 0.41 -0.6 756,623 - HMPREF1058_RS09945 0.45 -0.6 756,627 - HMPREF1058_RS09945 0.46 +0.2 756,650 + HMPREF1058_RS09945 0.48 -0.2 756,651 - HMPREF1058_RS09945 0.48 -2.0 756,651 - HMPREF1058_RS09945 0.48 -2.3 756,651 - HMPREF1058_RS09945 0.48 -0.9 756,652 + HMPREF1058_RS09945 0.48 -0.2 756,652 + HMPREF1058_RS09945 0.48 -1.0 756,655 - HMPREF1058_RS09945 0.48 -0.1 756,655 - HMPREF1058_RS09945 0.48 +0.6 756,674 + HMPREF1058_RS09945 0.50 -2.9 756,676 + HMPREF1058_RS09945 0.51 +0.7 756,677 - HMPREF1058_RS09945 0.51 -1.2 756,677 - HMPREF1058_RS09945 0.51 +0.1 756,677 - HMPREF1058_RS09945 0.51 -1.6 756,677 - HMPREF1058_RS09945 0.51 -0.1 756,721 - HMPREF1058_RS09945 0.55 -0.7 756,753 + HMPREF1058_RS09945 0.58 -0.4
Or see this region's nucleotide sequence