Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09880 and HMPREF1058_RS09875 are separated by 201 nucleotides HMPREF1058_RS09875 and HMPREF1058_RS09870 overlap by 4 nucleotides HMPREF1058_RS09870 and HMPREF1058_RS09865 are separated by 19 nucleotides HMPREF1058_RS09865 and HMPREF1058_RS09860 are separated by 2 nucleotides HMPREF1058_RS09860 and HMPREF1058_RS09855 are separated by 2 nucleotides
HMPREF1058_RS09880: HMPREF1058_RS09880 - DUF4134 domain-containing protein, at 768,234 to 768,545
_RS09880
HMPREF1058_RS09875: HMPREF1058_RS09875 - hypothetical protein, at 768,747 to 769,466
_RS09875
HMPREF1058_RS09870: HMPREF1058_RS09870 - DUF3408 domain-containing protein, at 769,463 to 769,705
_RS09870
HMPREF1058_RS09865: HMPREF1058_RS09865 - DUF3408 domain-containing protein, at 769,725 to 770,072
_RS09865
HMPREF1058_RS09860: HMPREF1058_RS09860 - DUF3408 domain-containing protein, at 770,075 to 770,515
_RS09860
HMPREF1058_RS09855: HMPREF1058_RS09855 - ParA family protein, at 770,518 to 771,567
_RS09855
Position (kb) 769
770 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 768.501 kb on - strand, within HMPREF1058_RS09880 at 768.750 kb on + strand at 769.466 kb on + strand at 769.466 kb on + strand at 769.466 kb on + strand at 769.495 kb on + strand, within HMPREF1058_RS09870 at 769.495 kb on + strand, within HMPREF1058_RS09870 at 769.495 kb on + strand, within HMPREF1058_RS09870 at 769.495 kb on + strand, within HMPREF1058_RS09870 at 769.583 kb on + strand, within HMPREF1058_RS09870 at 769.629 kb on + strand, within HMPREF1058_RS09870 at 769.891 kb on + strand, within HMPREF1058_RS09865 at 769.891 kb on + strand, within HMPREF1058_RS09865 at 770.292 kb on + strand, within HMPREF1058_RS09860 at 770.427 kb on + strand, within HMPREF1058_RS09860 at 770.519 kb on + strand at 770.542 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 768,501 - HMPREF1058_RS09880 0.86 -2.3 768,750 + -0.2 769,466 + +2.1 769,466 + -2.1 769,466 + -0.2 769,495 + HMPREF1058_RS09870 0.13 -0.7 769,495 + HMPREF1058_RS09870 0.13 -0.9 769,495 + HMPREF1058_RS09870 0.13 -0.6 769,495 + HMPREF1058_RS09870 0.13 -3.6 769,583 + HMPREF1058_RS09870 0.49 -2.9 769,629 + HMPREF1058_RS09870 0.68 -0.5 769,891 + HMPREF1058_RS09865 0.48 -0.5 769,891 + HMPREF1058_RS09865 0.48 +1.2 770,292 + HMPREF1058_RS09860 0.49 -0.8 770,427 + HMPREF1058_RS09860 0.80 -0.3 770,519 + -0.6 770,542 + -0.5
Or see this region's nucleotide sequence