Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09755 and HMPREF1058_RS09750 are separated by 25 nucleotides HMPREF1058_RS09750 and HMPREF1058_RS09745 overlap by 8 nucleotides HMPREF1058_RS09745 and HMPREF1058_RS09740 are separated by 12 nucleotides
HMPREF1058_RS09755: HMPREF1058_RS09755 - YfhO family protein, at 802,043 to 804,535
_RS09755
HMPREF1058_RS09750: HMPREF1058_RS09750 - glycosyltransferase, at 804,561 to 805,307
_RS09750
HMPREF1058_RS09745: HMPREF1058_RS09745 - glycosyltransferase, at 805,300 to 806,562
_RS09745
HMPREF1058_RS09740: HMPREF1058_RS09740 - glycosyltransferase family 4 protein, at 806,575 to 807,690
_RS09740
Position (kb) 805
806
807 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 804.592 kb on - strand at 804.592 kb on - strand at 804.601 kb on - strand at 804.698 kb on - strand, within HMPREF1058_RS09750 at 804.843 kb on + strand, within HMPREF1058_RS09750 at 804.902 kb on + strand, within HMPREF1058_RS09750 at 804.904 kb on + strand, within HMPREF1058_RS09750 at 804.949 kb on - strand, within HMPREF1058_RS09750 at 804.984 kb on + strand, within HMPREF1058_RS09750 at 805.001 kb on + strand, within HMPREF1058_RS09750 at 805.002 kb on - strand, within HMPREF1058_RS09750 at 805.124 kb on + strand, within HMPREF1058_RS09750 at 805.125 kb on - strand, within HMPREF1058_RS09750 at 805.136 kb on - strand, within HMPREF1058_RS09750 at 805.136 kb on - strand, within HMPREF1058_RS09750 at 805.187 kb on + strand, within HMPREF1058_RS09750 at 805.190 kb on - strand, within HMPREF1058_RS09750 at 805.203 kb on - strand, within HMPREF1058_RS09750 at 805.243 kb on - strand at 805.268 kb on + strand at 805.269 kb on - strand at 805.340 kb on + strand at 805.341 kb on - strand at 805.515 kb on + strand, within HMPREF1058_RS09745 at 805.572 kb on + strand, within HMPREF1058_RS09745 at 805.579 kb on + strand, within HMPREF1058_RS09745 at 805.592 kb on - strand, within HMPREF1058_RS09745 at 805.610 kb on - strand, within HMPREF1058_RS09745 at 805.658 kb on + strand, within HMPREF1058_RS09745 at 805.659 kb on - strand, within HMPREF1058_RS09745 at 805.674 kb on + strand, within HMPREF1058_RS09745 at 805.697 kb on + strand, within HMPREF1058_RS09745 at 805.698 kb on - strand, within HMPREF1058_RS09745 at 805.791 kb on - strand, within HMPREF1058_RS09745 at 805.981 kb on + strand, within HMPREF1058_RS09745 at 806.000 kb on - strand, within HMPREF1058_RS09745 at 806.050 kb on - strand, within HMPREF1058_RS09745 at 806.055 kb on - strand, within HMPREF1058_RS09745 at 806.115 kb on - strand, within HMPREF1058_RS09745 at 806.163 kb on + strand, within HMPREF1058_RS09745 at 806.163 kb on + strand, within HMPREF1058_RS09745 at 806.205 kb on + strand, within HMPREF1058_RS09745 at 806.233 kb on - strand, within HMPREF1058_RS09745 at 806.233 kb on - strand, within HMPREF1058_RS09745 at 806.233 kb on - strand, within HMPREF1058_RS09745 at 806.233 kb on - strand, within HMPREF1058_RS09745 at 806.334 kb on + strand, within HMPREF1058_RS09745 at 806.364 kb on + strand, within HMPREF1058_RS09745 at 806.413 kb on + strand, within HMPREF1058_RS09745 at 806.414 kb on - strand, within HMPREF1058_RS09745 at 806.428 kb on + strand, within HMPREF1058_RS09745 at 806.429 kb on - strand, within HMPREF1058_RS09745 at 806.429 kb on - strand, within HMPREF1058_RS09745 at 806.470 kb on + strand at 806.471 kb on - strand at 806.542 kb on - strand at 806.550 kb on + strand at 806.550 kb on + strand at 806.550 kb on + strand at 806.555 kb on - strand at 806.555 kb on - strand at 806.766 kb on - strand, within HMPREF1058_RS09740 at 806.766 kb on - strand, within HMPREF1058_RS09740 at 806.783 kb on - strand, within HMPREF1058_RS09740 at 806.797 kb on + strand, within HMPREF1058_RS09740 at 806.797 kb on + strand, within HMPREF1058_RS09740 at 806.883 kb on + strand, within HMPREF1058_RS09740 at 806.949 kb on - strand, within HMPREF1058_RS09740 at 806.967 kb on + strand, within HMPREF1058_RS09740 at 806.970 kb on - strand, within HMPREF1058_RS09740 at 807.021 kb on - strand, within HMPREF1058_RS09740 at 807.046 kb on + strand, within HMPREF1058_RS09740 at 807.047 kb on - strand, within HMPREF1058_RS09740 at 807.050 kb on + strand, within HMPREF1058_RS09740 at 807.101 kb on - strand, within HMPREF1058_RS09740 at 807.101 kb on - strand, within HMPREF1058_RS09740 at 807.101 kb on - strand, within HMPREF1058_RS09740 at 807.101 kb on - strand, within HMPREF1058_RS09740 at 807.129 kb on + strand, within HMPREF1058_RS09740 at 807.176 kb on + strand, within HMPREF1058_RS09740 at 807.176 kb on + strand, within HMPREF1058_RS09740 at 807.177 kb on - strand, within HMPREF1058_RS09740 at 807.279 kb on + strand, within HMPREF1058_RS09740 at 807.279 kb on + strand, within HMPREF1058_RS09740 at 807.296 kb on + strand, within HMPREF1058_RS09740 at 807.297 kb on - strand, within HMPREF1058_RS09740 at 807.400 kb on + strand, within HMPREF1058_RS09740 at 807.401 kb on - strand, within HMPREF1058_RS09740 at 807.433 kb on - strand, within HMPREF1058_RS09740 at 807.477 kb on + strand, within HMPREF1058_RS09740 at 807.485 kb on + strand, within HMPREF1058_RS09740 at 807.493 kb on + strand, within HMPREF1058_RS09740 at 807.494 kb on - strand, within HMPREF1058_RS09740 at 807.525 kb on + strand, within HMPREF1058_RS09740 at 807.525 kb on + strand, within HMPREF1058_RS09740
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 804,592 - +1.4 804,592 - -3.2 804,601 - -2.6 804,698 - HMPREF1058_RS09750 0.18 +0.7 804,843 + HMPREF1058_RS09750 0.38 -0.2 804,902 + HMPREF1058_RS09750 0.46 -3.3 804,904 + HMPREF1058_RS09750 0.46 +1.4 804,949 - HMPREF1058_RS09750 0.52 -1.3 804,984 + HMPREF1058_RS09750 0.57 -0.1 805,001 + HMPREF1058_RS09750 0.59 -0.4 805,002 - HMPREF1058_RS09750 0.59 -1.8 805,124 + HMPREF1058_RS09750 0.75 -0.9 805,125 - HMPREF1058_RS09750 0.76 -1.8 805,136 - HMPREF1058_RS09750 0.77 -2.9 805,136 - HMPREF1058_RS09750 0.77 -4.6 805,187 + HMPREF1058_RS09750 0.84 -1.4 805,190 - HMPREF1058_RS09750 0.84 -0.8 805,203 - HMPREF1058_RS09750 0.86 -0.9 805,243 - -3.4 805,268 + +0.4 805,269 - -1.0 805,340 + -3.8 805,341 - +0.1 805,515 + HMPREF1058_RS09745 0.17 -1.8 805,572 + HMPREF1058_RS09745 0.22 -2.4 805,579 + HMPREF1058_RS09745 0.22 -1.4 805,592 - HMPREF1058_RS09745 0.23 -2.6 805,610 - HMPREF1058_RS09745 0.25 -1.4 805,658 + HMPREF1058_RS09745 0.28 -4.5 805,659 - HMPREF1058_RS09745 0.28 -0.5 805,674 + HMPREF1058_RS09745 0.30 +0.2 805,697 + HMPREF1058_RS09745 0.31 -1.2 805,698 - HMPREF1058_RS09745 0.32 +1.4 805,791 - HMPREF1058_RS09745 0.39 +1.4 805,981 + HMPREF1058_RS09745 0.54 -1.1 806,000 - HMPREF1058_RS09745 0.55 -1.3 806,050 - HMPREF1058_RS09745 0.59 -4.0 806,055 - HMPREF1058_RS09745 0.60 +0.1 806,115 - HMPREF1058_RS09745 0.65 -1.2 806,163 + HMPREF1058_RS09745 0.68 -3.2 806,163 + HMPREF1058_RS09745 0.68 -2.3 806,205 + HMPREF1058_RS09745 0.72 -0.8 806,233 - HMPREF1058_RS09745 0.74 -2.0 806,233 - HMPREF1058_RS09745 0.74 -2.1 806,233 - HMPREF1058_RS09745 0.74 +0.6 806,233 - HMPREF1058_RS09745 0.74 -0.9 806,334 + HMPREF1058_RS09745 0.82 +1.4 806,364 + HMPREF1058_RS09745 0.84 -3.9 806,413 + HMPREF1058_RS09745 0.88 +0.4 806,414 - HMPREF1058_RS09745 0.88 -0.2 806,428 + HMPREF1058_RS09745 0.89 -1.4 806,429 - HMPREF1058_RS09745 0.89 -0.9 806,429 - HMPREF1058_RS09745 0.89 -2.5 806,470 + -2.1 806,471 - +1.4 806,542 - -1.6 806,550 + -3.0 806,550 + -0.6 806,550 + -1.1 806,555 - +1.4 806,555 - -1.1 806,766 - HMPREF1058_RS09740 0.17 -3.1 806,766 - HMPREF1058_RS09740 0.17 +2.0 806,783 - HMPREF1058_RS09740 0.19 +0.6 806,797 + HMPREF1058_RS09740 0.20 +0.1 806,797 + HMPREF1058_RS09740 0.20 -0.9 806,883 + HMPREF1058_RS09740 0.28 -1.1 806,949 - HMPREF1058_RS09740 0.34 +1.2 806,967 + HMPREF1058_RS09740 0.35 -1.1 806,970 - HMPREF1058_RS09740 0.35 -1.5 807,021 - HMPREF1058_RS09740 0.40 +0.7 807,046 + HMPREF1058_RS09740 0.42 +0.8 807,047 - HMPREF1058_RS09740 0.42 -0.9 807,050 + HMPREF1058_RS09740 0.43 -0.5 807,101 - HMPREF1058_RS09740 0.47 +0.9 807,101 - HMPREF1058_RS09740 0.47 +0.1 807,101 - HMPREF1058_RS09740 0.47 -0.4 807,101 - HMPREF1058_RS09740 0.47 -0.3 807,129 + HMPREF1058_RS09740 0.50 -1.1 807,176 + HMPREF1058_RS09740 0.54 -1.2 807,176 + HMPREF1058_RS09740 0.54 +1.0 807,177 - HMPREF1058_RS09740 0.54 -0.2 807,279 + HMPREF1058_RS09740 0.63 -1.2 807,279 + HMPREF1058_RS09740 0.63 +0.6 807,296 + HMPREF1058_RS09740 0.65 +0.0 807,297 - HMPREF1058_RS09740 0.65 -0.1 807,400 + HMPREF1058_RS09740 0.74 -1.4 807,401 - HMPREF1058_RS09740 0.74 -0.3 807,433 - HMPREF1058_RS09740 0.77 +0.9 807,477 + HMPREF1058_RS09740 0.81 +2.7 807,485 + HMPREF1058_RS09740 0.82 +1.3 807,493 + HMPREF1058_RS09740 0.82 +1.7 807,494 - HMPREF1058_RS09740 0.82 -1.9 807,525 + HMPREF1058_RS09740 0.85 +2.4 807,525 + HMPREF1058_RS09740 0.85 +0.3
Or see this region's nucleotide sequence