Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09680 and HMPREF1058_RS09675 are separated by 66 nucleotides HMPREF1058_RS09675 and HMPREF1058_RS09670 are separated by 32 nucleotides
HMPREF1058_RS09680: HMPREF1058_RS09680 - site-specific tyrosine recombinase XerD, at 822,963 to 823,904
_RS09680
HMPREF1058_RS09675: HMPREF1058_RS09675 - type II 3-dehydroquinate dehydratase, at 823,971 to 824,393
_RS09675
HMPREF1058_RS09670: HMPREF1058_RS09670 - pyruvate kinase, at 824,426 to 825,889
_RS09670
Position (kb) 823
824
825 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 822.983 kb on + strand at 823.039 kb on - strand at 823.055 kb on + strand at 823.100 kb on + strand, within HMPREF1058_RS09680 at 823.100 kb on + strand, within HMPREF1058_RS09680 at 823.101 kb on - strand, within HMPREF1058_RS09680 at 823.101 kb on - strand, within HMPREF1058_RS09680 at 823.101 kb on - strand, within HMPREF1058_RS09680 at 823.101 kb on - strand at 823.321 kb on + strand, within HMPREF1058_RS09680 at 823.355 kb on + strand, within HMPREF1058_RS09680 at 823.377 kb on - strand, within HMPREF1058_RS09680 at 823.469 kb on - strand, within HMPREF1058_RS09680 at 823.543 kb on - strand, within HMPREF1058_RS09680 at 823.810 kb on + strand at 823.810 kb on + strand at 823.811 kb on - strand at 823.819 kb on - strand at 823.856 kb on - strand at 823.959 kb on + strand at 823.964 kb on + strand at 823.966 kb on + strand at 823.997 kb on + strand at 824.078 kb on + strand, within HMPREF1058_RS09675 at 824.193 kb on + strand, within HMPREF1058_RS09675 at 824.195 kb on + strand, within HMPREF1058_RS09675 at 824.201 kb on + strand, within HMPREF1058_RS09675 at 824.201 kb on + strand, within HMPREF1058_RS09675 at 824.201 kb on + strand, within HMPREF1058_RS09675 at 824.400 kb on + strand at 824.409 kb on + strand at 824.409 kb on + strand at 824.425 kb on + strand at 824.512 kb on + strand at 824.734 kb on + strand at 825.217 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Arabinoxylan (Rye Flour) 2.5 mg/ml (C) remove 822,983 + -1.7 823,039 - +1.9 823,055 + +0.7 823,100 + HMPREF1058_RS09680 0.15 -0.8 823,100 + HMPREF1058_RS09680 0.15 -1.5 823,101 - HMPREF1058_RS09680 0.15 -1.0 823,101 - HMPREF1058_RS09680 0.15 +1.4 823,101 - HMPREF1058_RS09680 0.15 -1.3 823,101 - +0.4 823,321 + HMPREF1058_RS09680 0.38 +0.6 823,355 + HMPREF1058_RS09680 0.42 -2.4 823,377 - HMPREF1058_RS09680 0.44 -1.5 823,469 - HMPREF1058_RS09680 0.54 +0.2 823,543 - HMPREF1058_RS09680 0.62 +1.6 823,810 + +0.9 823,810 + +0.2 823,811 - -0.8 823,819 - +0.2 823,856 - -1.7 823,959 + +0.8 823,964 + +1.5 823,966 + -4.0 823,997 + -1.3 824,078 + HMPREF1058_RS09675 0.25 -1.4 824,193 + HMPREF1058_RS09675 0.52 +0.7 824,195 + HMPREF1058_RS09675 0.53 -1.9 824,201 + HMPREF1058_RS09675 0.54 -3.6 824,201 + HMPREF1058_RS09675 0.54 -1.5 824,201 + HMPREF1058_RS09675 0.54 -2.7 824,400 + -0.0 824,409 + -0.9 824,409 + -1.8 824,425 + -0.8 824,512 + -1.2 824,734 + -0.8 825,217 + +2.0
Or see this region's nucleotide sequence