Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS08850

Experiment: Arabinoxylan (Rye Flour) 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Arabinoxylan (Rye Flour) 2.5 mg/ml (C)
1,013,652	-		HMPREF1058_RS08860	0.88	-0.9
1,013,662	+		HMPREF1058_RS08860	0.89	-2.0
1,013,662	+		HMPREF1058_RS08860	0.89	+1.1
1,013,703	+				-0.5
1,013,708	+				-0.7
1,013,766	+				+0.6
1,013,766	+				+0.8
1,013,766	+				+1.4
1,013,767	-				-0.9
1,013,775	-				-0.5
1,013,812	+				-0.3
1,013,851	+				+1.1
1,013,907	+				-0.1
1,013,908	-				-0.3
1,013,909	+				+0.3
1,013,928	+				+0.1
1,013,928	+				-1.4
1,013,944	+				-0.1
1,013,961	+				+0.0
1,014,079	+				-1.8
1,014,080	-				-0.1
1,014,080	-				-2.0
1,014,080	-				-0.6
1,014,081	+				-3.9
1,014,191	-		HMPREF1058_RS08855	0.12	-1.2
1,014,252	-		HMPREF1058_RS08855	0.25	-0.6
1,014,317	-		HMPREF1058_RS08855	0.39	-0.4
1,014,318	+		HMPREF1058_RS08855	0.39	-0.6
1,014,318	+		HMPREF1058_RS08855	0.39	-1.2
1,014,318	+		HMPREF1058_RS08855	0.39	-1.5
1,014,319	-		HMPREF1058_RS08855	0.39	-0.6
1,014,323	-		HMPREF1058_RS08855	0.40	-1.2
1,014,323	-		HMPREF1058_RS08855	0.40	-2.9
1,014,335	+		HMPREF1058_RS08855	0.43	-2.5
1,014,336	-				+0.1
1,014,343	-		HMPREF1058_RS08855	0.44	-1.1
1,014,343	-		HMPREF1058_RS08855	0.44	-2.8
1,014,343	-		HMPREF1058_RS08855	0.44	-1.0
1,014,431	-		HMPREF1058_RS08855	0.63	-1.5
1,014,468	+		HMPREF1058_RS08855	0.70	-2.5
1,014,510	-		HMPREF1058_RS08855	0.79	-1.7
1,014,510	-		HMPREF1058_RS08855	0.79	-1.8
1,014,527	+		HMPREF1058_RS08855	0.83	-1.6
1,014,528	-		HMPREF1058_RS08855	0.83	-1.6
1,014,528	-		HMPREF1058_RS08855	0.83	-1.4
1,014,593	-				-1.1
1,014,602	-				-2.3
1,014,606	+				-3.9
1,014,612	-				-1.8
1,014,616	+				-0.9
1,014,616	+				-1.5
1,014,617	-				-1.3
1,014,702	+		HMPREF1058_RS08850	0.13	-4.0
1,014,703	-		HMPREF1058_RS08850	0.13	-0.0
1,014,761	-		HMPREF1058_RS08850	0.23	-1.8
1,014,835	-		HMPREF1058_RS08850	0.37	-3.9
1,014,859	+		HMPREF1058_RS08850	0.41	-1.9
1,014,860	-		HMPREF1058_RS08850	0.41	-1.7
1,014,860	-		HMPREF1058_RS08850	0.41	-0.1
1,014,860	-		HMPREF1058_RS08850	0.41	-0.7
1,014,860	-		HMPREF1058_RS08850	0.41	-3.2
1,014,860	-		HMPREF1058_RS08850	0.41	-1.3
1,014,863	+		HMPREF1058_RS08850	0.42	-0.3
1,014,922	-		HMPREF1058_RS08850	0.52	-0.9
1,014,974	+		HMPREF1058_RS08850	0.61	-3.0
1,015,125	+		HMPREF1058_RS08850	0.89	+1.9
1,015,141	-				-2.0
1,015,187	-				+2.4
1,015,245	+				+0.4
1,015,249	+				+0.7
1,015,318	+				-1.7
1,015,318	+				-1.4
1,015,318	+				-2.0
1,015,321	+				-1.9
1,015,322	-				-1.1
1,015,360	+				-3.0
1,015,361	-				-1.4
1,015,395	+				-0.6
1,015,396	-				-0.8
1,015,509	+		HMPREF1058_RS08845	0.18	-2.1
1,015,509	+		HMPREF1058_RS08845	0.18	-1.1
1,015,509	+		HMPREF1058_RS08845	0.18	-2.6
1,015,510	-		HMPREF1058_RS08845	0.18	-3.0
1,015,530	+		HMPREF1058_RS08845	0.19	-0.9
1,015,530	+		HMPREF1058_RS08845	0.19	-1.5
1,015,531	-		HMPREF1058_RS08845	0.19	-2.1
1,015,531	-		HMPREF1058_RS08845	0.19	-0.8
1,015,532	+		HMPREF1058_RS08845	0.20	-3.6
1,015,562	+		HMPREF1058_RS08845	0.22	-1.5
1,015,566	+		HMPREF1058_RS08845	0.22	-0.4
1,015,571	+		HMPREF1058_RS08845	0.23	+0.1
1,015,571	+		HMPREF1058_RS08845	0.23	+0.1
1,015,621	-		HMPREF1058_RS08845	0.27	-2.0
1,015,757	-		HMPREF1058_RS08845	0.38	-0.1
1,015,856	+		HMPREF1058_RS08845	0.46	-2.0
1,015,856	+		HMPREF1058_RS08845	0.46	-1.2
1,015,952	+		HMPREF1058_RS08845	0.54	-1.6
1,015,952	+		HMPREF1058_RS08845	0.54	+0.4
1,016,007	-		HMPREF1058_RS08845	0.59	-0.0
1,016,007	-		HMPREF1058_RS08845	0.59	-0.1
1,016,126	+		HMPREF1058_RS08845	0.69	-0.4